PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245384.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 476aa    MW: 53726.5 Da    PI: 7.2515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245384.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11297343455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_008245384.1 297 KHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 343
                     699***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-3722211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.993293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16296359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-12296347No hitNo description
PfamPF000104.1E-9297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15297355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEEIIPSSSP PQLCQENSVS FQQRLQFIVQ NRPEWWVYSI FWQASKDSND QVALSWAGGH  60
FESPRDLASK RSNKMVNNKH FVERKKVINN REAESLFHEE MDLDMRLVDH GVGDVTDCEW  120
LYFYSISLTQ SFVAGHATNN ILGRSFCSGG FVWLAGDHEL QFYECERVKK ARMHGIKSLV  180
CIATPCGVLE LASLDVIKED LGLVLLSKSL FLSDNNRVSK QDSRDGNALV PPLESGMFSG  240
GQKDLTKQEG DTKEAAPINI GGSSSDSADN FTSDNTESTR LKKRGRSSSN HAPQLLKHVE  300
AERQRREKLN HRFYVLRSVV PNVSKMDRSS LLADAVAYIN QLKAKIEELE DKIQSQPQNP  360
KRGNVSNADH HHYSQSTSPI VDFHHSNNNN TNRAADALEV DVKILGSEAV IRVQCPDQEY  420
PYAKLMNALK SLRLQVYHAS ISNVKELMIQ NVVVRVPYGF TSDEAMRVGI IKKWYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-26152113192Transcription factor MYC3
4rqw_B2e-26152113192Transcription factor MYC3
4rs9_A2e-26152113192Transcription factor MYC3
4yz6_A2e-26152113192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280286LKKRGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245384.10.0PREDICTED: transcription factor bHLH14-like isoform X1
TrEMBLM5WC300.0M5WC30_PRUPE; Uncharacterized protein
STRINGXP_008245384.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-57bHLH family protein