PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245277.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 332aa    MW: 37482.1 Da    PI: 8.7662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245277.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-131662147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT+ Ed++l+  v+++G g+W + +++ g+ R++k+ ++rw++y
   XP_008245277.1 16 KGHWTPAEDQKLLAFVQKHGHGNWQSLPQRAGLQRCGKSRRLRWRNY 62
                     789*******************************************9 PP
2Myb_DNA-binding44.53.5e-1470113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +Ed+ +++++++lG++ W++I ++++ +Rt+ ++k++w++
   XP_008245277.1  70 RGNFSLQEDQTIIQLHALLGNR-WSAITAHLP-KRTDSEVKNYWHS 113
                      89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-19869IPR009057Homeodomain-like
PROSITE profilePS5129413.5241164IPR017930Myb domain
SuperFamilySSF466892.11E-2613111IPR009057Homeodomain-like
SMARTSM007173.9E-81565IPR001005SANT/Myb domain
PfamPF002491.5E-121662IPR001005SANT/Myb domain
CDDcd001675.44E-91962No hitNo description
PROSITE profilePS5129423.07465119IPR017930Myb domain
SMARTSM007171.3E-1369117IPR001005SANT/Myb domain
PfamPF002496.0E-1370113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2170119IPR009057Homeodomain-like
CDDcd001672.76E-972115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGKSTQYCVA SSGMKKGHWT PAEDQKLLAF VQKHGHGNWQ SLPQRAGLQR CGKSRRLRWR  60
NYXLRPDIKR GNFSLQEDQT IIQLHALLGN RWSAITAHLP KRTDSEVKNY WHSRLKKRLA  120
LKGYDPVTHK PKITIFGFAN GSTDDPKTGS NLNHIAQWES VRIQAEARFV RDISELHKQA  180
YHPYNNNDIF ATSSILSCYN KDFGPTDQLF GQNAPQCLDI LRAWEIILTS NYSKATCGQD  240
HVNSFGNRLA GDFEPPIISA ISNNGSSLMD CFVHEPVGQC FDENYGTSIT EPFAAVYHNM  300
GFKNNGACLE DFGLWEIIMQ GKKDCPIPGI SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-22161197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245277.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB32-like
SwissprotQ9LE632e-75MY106_ARATH; Transcription factor MYB106
TrEMBLA0A251PXC70.0A0A251PXC7_PRUPE; Uncharacterized protein
STRINGXP_008245277.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1903726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.18e-77myb domain protein 106