PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245180.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 153aa    MW: 16481.4 Da    PI: 4.585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245180.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.0002518432654
                    TSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 26 llPkaskapskKlsKaeiLekAveYIksL 54
                    l       +s  l+Ka+i   A +YIk+L
  XP_008245180.1 18 LRAAT---NSNALNKASIIVDASNYIKEL 43
                    33333...6667***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.47E-51261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-52352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.92E-576143No hitNo description
PROSITE profilePS516719.39277153IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSSGDRKKAV LYHQLQQLRA ATNSNALNKA SIIVDASNYI KELKQKVDTL RQGVGTSTSP  60
NPSPAVTVET LERGFLINVL SDKNSPGLLV SILEAFEELG LDVLDARVSC SDTFQLEAVG  120
GENQGQADSI DAHVVKQAVL QAIQNWSQSS EQD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245180.11e-108PREDICTED: uncharacterized protein LOC103343285 isoform X2
TrEMBLM5WE191e-106M5WE19_PRUPE; Uncharacterized protein
STRINGEMJ075281e-107(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.16e-09beta HLH protein 93