PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244960.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 265aa MW: 29465.3 Da PI: 7.6373

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244960.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H XP_008244960.1 85 FECQYCFKEFANSQALGGHQNAH 107 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.8E-5	80	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.31E-6	81	112	No hit	No description
PROSITE profile	PS50157	11.406	85	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEKGHDQDLD QNHAHSAGSC VEKKLRLFGF ELSPSKNEDS SIKGSAEGDE SVNSSNSISY 60 GREVHMNKPA SNEKSSTSEA DDKKFECQYC FKEFANSQAL GGHQNAHKKE RMKKKRLQLQ 120 ARKASINYYL QPFQTNNLGN GLAFHHGSSP SSWFYDPSSY VVNPDQFTLH EEAQISFNPF 180 DQNGSSGSQV SNWYALPPQF SSQTDEQDAS NNKFTLTQTD RSGESRPVVF KPSPLSASTQ 240 SCKPLNLQLG LGLPSKIRRS SRSEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244960.1	0.0	PREDICTED: zinc finger protein 5-like
TrEMBL	M5XQD4	0.0	M5XQD4_PRUPE; Uncharacterized protein
STRING	XP_008244960.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9594	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	7e-17	zinc finger protein 5