PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 839aa MW: 92435.1 Da PI: 7.4217 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.9 | 7.6e-18 | 326 | 425 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_008244884.1 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 418 89**************************555567778***************9989999999***9.********************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_008244884.1 419 LIMGFRK 425 7777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-29 | 318 | 429 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-19 | 323 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-21 | 324 | 425 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 326 | 427 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-15 | 326 | 425 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 326 | 427 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.286 | 555 | 605 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.3E-12 | 560 | 602 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MEPRTCTNAA CGTSSSIEWK KGWALRSGGF ANLCLKCWSA YEQSIFCDIF HSKESGWREC 60 ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT 120 AQDNQLDGTN VENLKLIQLG NNKDCNGFRN LLQLQNNDAN GLLQKMKHND TPPPVGEIGG 180 TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPRTNL SMSLGAPLGK ANPVPAAMFD 240 EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP 300 RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG 360 LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI 420 MGFRKASNSV AMQSLKGSMD PHLNALSKHL TTASGDISWH KSEKQEGRTR EGMLLPSLLV 480 PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PAAKPSTIMI EDLEFEEYEE 540 PPVFGKRSIF IVRSTGEHEQ WAQCDSCSKW RRLPVDVLLP SKWTCADNAW DQSRRSCSAP 600 DELAPRELES FLRMSKEFKK RRTVADNRPT QEHESSGLDA LANAAILGDN AADPGTASVA 660 TTTKHPRHRP GCSCIVCIQP PSGKGKHKPN CTCNVCNTVK RRFKTLMINK KKRQSEREAE 720 IAYRNQHAWG PRDEAEVDST SRHVSSHVDP SDNEARSANE SDSKSQSKVA ETGKGILDLN 780 CHPGREGELQ AGPNHATSST SHVPPQATNE SEDQHNENQC QEQESGGEGR PDQGQDDPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-70 | 304 | 433 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244884.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X4 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A251P0R8 | 0.0 | A0A251P0R8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244859.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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