PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244865.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 906aa    MW: 99692.4 Da    PI: 7.085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244865.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-18326425198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_008244865.1 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 418
                     89**************************555567778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_008244865.1 419 LIMGFRK 425
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-29318428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-19323425IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-21324425No hitNo description
PfamPF023622.5E-15326425IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138326427IPR003340B3 DNA binding domain
SMARTSM010191.8E-19326427IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286591641IPR011124Zinc finger, CW-type
PfamPF074961.4E-12596638IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MEPRTCTNAA CGTSSSIEWK KGWALRSGGF ANLCLKCWSA YEQSIFCDIF HSKESGWREC  60
ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT  120
AQDNQLDGTN VENLKLIQLG NNKDCNGFRN LLQLQNNDAN GLLQKMKHND TPPPVGEIGG  180
TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPRTNL SMSLGAPLGK ANPVPAAMFD  240
EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP  300
RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG  360
LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI  420
MGFRKASNSV AMQDTHLTAI HNGAHSSETF FSGVFENLPV ISGYPGLLQS LKGSMDPHLN  480
ALSKHLTTAS GDISWHKSEK QEGRTREGML LPSLLVPERK RTRNIGSKSK RLLIDSQDAL  540
ELKLTWEEAQ DLLRPPPAAK PSTIMIEDLE FEEYEEPPVF GKRSIFIVRS TGEHEQWAQC  600
DSCSKWRRLP VDVLLPSKWT CADNAWDQSR RSCSAPDELA PRELESFLRM SKEFKKRRTV  660
ADNRPTQEHE SSGLDALANA AILGDNAADP GTASVATTTK HPRHRPGCSC IVCIQPPSGK  720
GKHKPNCTCN VCNTVKRRFK TLMINKKKRQ SEREAEIAYR NQHAWGPRDE AEVDSTSRHV  780
SSHVDPSDNE ARSANESDSK SQSKVAETGK GILDLNCHPG REGELQAGPN HVSMMSLVQV  840
ASLPLETYLK HNGLTSLMSE QQATSSTSHV PPQATNESED QHNENQCQEQ ESGGEGRPDQ  900
GQDDPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-693044332131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244859.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_008244865.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A251NXC50.0A0A251NXC5_PRUPE; Uncharacterized protein
STRINGXP_008244859.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]