PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244497.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 377aa MW: 43210 Da PI: 8.7114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244497.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.5	1.2e-09	59	105	46	91
FAR1 46 kktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++t++++r+r +r++Ckak++v k++ ++k+ ++ + + HnH+++p XP_008244497.1 59 DETRERKRQRGISRCNCKAKIVVVKTHgSKKYTISLFAEGHNHKMTP 105 345688999***********999999**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-7	60	105	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-34	225	318	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MSGGSESDDS VTANGRVYIP EVRNEETPAV GMKFDSLDLV YNFYNRYAFL AGFGVYRNDE 60 TRERKRQRGI SRCNCKAKIV VVKTHGSKKY TISLFAEGHN HKMTPSGRMH LLRSHRRISD 120 STKVLTKQLG SVNIPINQKV SIFEVQSGGM DKIGFIKKDI YNLECSVNGK LRNHDVELVT 180 EYFMAEQKKN EAFYFKIEGD GDNRFSRCFW ADATSRRAYG FYGDVVVFDT TFNTNRYDLT 240 FAPMLGVNNH GQTIVLACAF LSKETTESFI WMFEEFKKAM PGGEPKTIIT DQDAAMSRAI 300 SIAFPTTFHR LCIWHITSKF SVKLPHSAYK EYWGEFQKAI WDTDNKDEFD AKWNIVVTKA 360 GLTDHPWLSS MFDLRES

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MSGGSESDDS VTANGRVYIP EVRNEETPAV GMKFDSLDLV YNFYNRYAFL AGFGVYRNDE  60
TRERKRQRGI SRCNCKAKIV VVKTHGSKKY TISLFAEGHN HKMTPSGRMH LLRSHRRISD  120
STKVLTKQLG SVNIPINQKV SIFEVQSGGM DKIGFIKKDI YNLECSVNGK LRNHDVELVT  180
EYFMAEQKKN EAFYFKIEGD GDNRFSRCFW ADATSRRAYG FYGDVVVFDT TFNTNRYDLT  240
FAPMLGVNNH GQTIVLACAF LSKETTESFI WMFEEFKKAM PGGEPKTIIT DQDAAMSRAI  300
SIAFPTTFHR LCIWHITSKF SVKLPHSAYK EYWGEFQKAI WDTDNKDEFD AKWNIVVTKA  360
GLTDHPWLSS MFDLRES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244497.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253548	0.0	AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244497.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067D5X9	1e-126	A0A067D5X9_CITSI; Uncharacterized protein
STRING	XP_008244497.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-67	FAR1-related sequence 5