PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244325.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 242aa    MW: 28209.7 Da    PI: 8.5815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244325.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-151057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll +++++ G g W+ ++ + g+ R++k+c++rw++yl
   XP_008244325.1 10 KGAWTREEDDLLRQCIEKQGEGKWHQVPYKAGLSRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding50.54.8e-1663106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
   XP_008244325.1  63 RGDFTEDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNT 106
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.725557IPR017930Myb domain
SuperFamilySSF466891.57E-287104IPR009057Homeodomain-like
SMARTSM007171.6E-13959IPR001005SANT/Myb domain
PfamPF002494.4E-141057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211164IPR009057Homeodomain-like
CDDcd001676.09E-91257No hitNo description
PROSITE profilePS5129425.36858112IPR017930Myb domain
SMARTSM007179.7E-1662110IPR001005SANT/Myb domain
PfamPF002499.3E-1563106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2365110IPR009057Homeodomain-like
CDDcd001671.81E-1066108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEGYNLGVRK GAWTREEDDL LRQCIEKQGE GKWHQVPYKA GLSRCRKSCR LRWLNYLKPN  60
IKRGDFTEDE VDLIIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTRLRT DSRLKKLKDK  120
TQETIKIIVI RPQPRSFIKS SNCFSSKEPI LDHIQTVENF STPSQTSPST KNGNDWWETF  180
LDDEDAFERA TCYGLALEEE EFTSFWVDDM PQSKRQCTNA SERGLGGGDF SFNVDLWNHS  240
KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-22510922125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244325.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9364920.0GU936492.1 Prunus persica cultivar Jiaozhou blood flesh R2R3 MYB transcription factor 10 (MYB10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244325.10.0PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV92e-61MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2H4V1321e-180A0A2H4V132_PRUMU; Production of anthocyanin pigment 1-like protein
STRINGXP_008244325.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]