PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244229.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 437aa    MW: 49486 Da    PI: 5.9012
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244229.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.71.1e-40161441127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+GfrF+Ptdeelv++yLk+kv+g+++++e +i+e+di+k+ePwdL  k  +k ++++ +fFs+   +y+++k+++r+t++g+Wk tg+++++ 
  XP_008244229.1  16 LPVGFRFRPTDEELVDYYLKNKVQGTDFHAEGIIDEIDILKFEPWDLVaKsLMKPDDENGFFFSQP--EYTQKKNTKRSTEEGFWKITGREHDIR 108
                     79****************************999**************7443555566777999886..5677889******************** PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++  +++++g k++L+fy g+ +++ kt+Wvmhey 
  XP_008244229.1 109 TRdtRRTVIGKKRILTFYIGHGRNSDKTNWVMHEYY 144
                     99777778***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-4412163IPR003441NAC domain
PROSITE profilePS5100543.54316163IPR003441NAC domain
PfamPF023653.7E-2417144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MISFSRAAAE EGDLSLPVGF RFRPTDEELV DYYLKNKVQG TDFHAEGIID EIDILKFEPW  60
DLVAKSLMKP DDENGFFFSQ PEYTQKKNTK RSTEEGFWKI TGREHDIRTR DTRRTVIGKK  120
RILTFYIGHG RNSDKTNWVM HEYYIPKAHA NQRDFVLCHC HLKKNVKKSD EIHTDVATTC  180
DEGEPSTHNA SDFEHPPAHD ILEEYVDYNA LQPAFAANDL DVEFAEFLET VLVEPDGGVT  240
SDTDMEPFHG HGQAEMLSEV FYGSSQPSRD TGGIFRNQIS PQAPSSVNVA PKPQTDRVQL  300
KSDTSEGARG PRHQPGPIID TSADEYYTKE KTRRRTNPPA KPEQPAYRRT AADLPQKQIS  360
LTNSSQGKKV AQGKNAEKGM EQTQNRTTVS NWKGSFITWQ TSSLTTSPPS AYISNIFLGL  420
SLFYFCVREV VLFGEWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-261416518170NAC domain-containing protein 19
3swm_B4e-261416518170NAC domain-containing protein 19
3swm_C4e-261416518170NAC domain-containing protein 19
3swm_D4e-261416518170NAC domain-containing protein 19
3swp_A4e-261416518170NAC domain-containing protein 19
3swp_B4e-261416518170NAC domain-containing protein 19
3swp_C4e-261416518170NAC domain-containing protein 19
3swp_D4e-261416518170NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244229.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244229.10.0PREDICTED: NAC domain-containing protein 5-like
TrEMBLA0A314YPF60.0A0A314YPF6_PRUYE; NAC domain-containing protein 5
STRINGXP_008244229.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.23e-32NAC 014