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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_008244189.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
B3 |
Protein Properties |
Length: 434aa MW: 49638.9 Da PI: 7.4623 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_008244189.1 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 98.3 | 4.6e-31 | 115 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87
f+kv tpsdv+k++rlv+pk++ae++ + ++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+
XP_008244189.1 115 FDKVVTPSDVGKLNRLVIPKQHAERYfpldstA--NDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGDs 207
89*************************999643..346779************************************************665888 PP
SEE..EEEEE-S CS
B3 88 sefelvvkvfrk 99
+ +l++ ++r+
XP_008244189.1 208 GKDRLYIDWRRR 219
999999999997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MEFVQRDQKG YSDKEDQDQE DQEEEDIISS KFSSSSHNYN NSNYGSSPKY KATFVPPPLP 60 HHHQYQQQKP WAVHNHGSPE AINFMDLSLN HEQAAADGAN NNNNWPPNSE REHMFDKVVT 120 PSDVGKLNRL VIPKQHAERY FPLDSTANDK GLLLNFQDRT GKPWRFRYSY WNSSQSYVMT 180 KGWSRFVKEK KLDAGDIVSF ERGVGDSGKD RLYIDWRRRP PPPPPPPHHH HHGQFGNCND 240 RCGCGGGGGR LYSPLQRPPP SMMSMPLRHH DYFHPSNNNV HHPYHHHHHQ IMNHQYLQHQ 300 IHHQLQVERD QVVHHHHQYP MVVDSVPFVQ HGKMSSSGAS AGASTGKRLR LFGVNMECSP 360 NIEEDQTDEH QYQILPSTAI PYNHLPSSSL SAPLELRLPN TIVANQIPLP NTGAADQYLS 420 KKGKSTSLSF YLDP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-67 | 109 | 220 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-67 | 109 | 220 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
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