PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244180.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 489aa MW: 56972.6 Da PI: 6.4548

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244180.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.2	2.3e-38	18	140	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p+GfrF+Ptdeelv++yLk+k+eg + ++e++i+e+di+k+ePwdLp k +k+++++w+fF k +k +ratk+g+Wk t kd+ ++ XP_008244180.1 18 VPVGFRFRPTDEELVNYYLKNKLEGMDSHAENIIDEIDILKFEPWDLPdKsLIKSDDENWFFFYKYKK-------GSRATKEGFWKITSKDRVIK 105 599*************************999**********964477888899999987644.......579999********** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127 ++ +++++ k++L+fy gr +k++kt+Wv+hey XP_008244180.1 106 ARdNRTVIAKKRILTFYIGRVRKSTKTNWVIHEYY 140 995566688899********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-44	16	161	IPR003441	NAC domain
PROSITE profile	PS51005	45.667	18	163	IPR003441	NAC domain
Pfam	PF02365	1.9E-22	19	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MARLSRAAEE EEEGDLSVPV GFRFRPTDEE LVNYYLKNKL EGMDSHAENI IDEIDILKFE 60 PWDLPDKSLI KSDDENWFFF YKYKKGSRAT KEGFWKITSK DRVIKARDNR TVIAKKRILT 120 FYIGRVRKST KTNWVIHEYY IPDDAHPNAN KQRDFVLCHL KKNVKKSDEN TDVATTCDEG 180 ETSTHNASDF ENLPVHGMFQ MQEDIHPREN LDYFERTRDR WLANSHRNND HNAFQFDFEA 240 NDPEAEEFAR SLLIDPQFDT DTDTEPIYVQ SPERCEPQMF FEPQYVSSQS RRDTDVMFRN 300 LLSRQASSSV NVAPQPQTSE LQLQSGTSER THRPQPKSIS VLRDTSAVNV DALTFSVNRI 360 QLATDDEYYT KERTRRRTHP PVGKLREIKL QQSKAKEPEE RRTSVDLPQK QISITKSSID 420 GKVAQGKKTE KDVEQTQNRT TPSNWKGSFI TWQTFPLTSP PSVYICNTVL GSILFYFCLR 480 EVVLYGKWC

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MARLSRAAEE EEEGDLSVPV GFRFRPTDEE LVNYYLKNKL EGMDSHAENI IDEIDILKFE  60
PWDLPDKSLI KSDDENWFFF YKYKKGSRAT KEGFWKITSK DRVIKARDNR TVIAKKRILT  120
FYIGRVRKST KTNWVIHEYY IPDDAHPNAN KQRDFVLCHL KKNVKKSDEN TDVATTCDEG  180
ETSTHNASDF ENLPVHGMFQ MQEDIHPREN LDYFERTRDR WLANSHRNND HNAFQFDFEA  240
NDPEAEEFAR SLLIDPQFDT DTDTEPIYVQ SPERCEPQMF FEPQYVSSQS RRDTDVMFRN  300
LLSRQASSSV NVAPQPQTSE LQLQSGTSER THRPQPKSIS VLRDTSAVNV DALTFSVNRI  360
QLATDDEYYT KERTRRRTHP PVGKLREIKL QQSKAKEPEE RRTSVDLPQK QISITKSSID  420
GKVAQGKKTE KDVEQTQNRT TPSNWKGSFI TWQTFPLTSP PSVYICNTVL GSILFYFCLR  480
EVVLYGKWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-31	16	162	15	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-31	16	162	15	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-31	16	162	15	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-31	16	162	15	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-31	16	162	18	167	NAC domain-containing protein 19
3swm_B	2e-31	16	162	18	167	NAC domain-containing protein 19
3swm_C	2e-31	16	162	18	167	NAC domain-containing protein 19
3swm_D	2e-31	16	162	18	167	NAC domain-containing protein 19
3swp_A	2e-31	16	162	18	167	NAC domain-containing protein 19
3swp_B	2e-31	16	162	18	167	NAC domain-containing protein 19
3swp_C	2e-31	16	162	18	167	NAC domain-containing protein 19
3swp_D	2e-31	16	162	18	167	NAC domain-containing protein 19
4dul_A	2e-31	16	162	15	164	NAC domain-containing protein 19
4dul_B	2e-31	16	162	15	164	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244180.1	0.0	PREDICTED: NAC domain-containing protein 45-like isoform X2
TrEMBL	A0A314YGK5	0.0	A0A314YGK5_PRUYE; NAC domain-containing protein 45-like isoform X2
STRING	XP_008244179.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	2e-39	NAC domain containing protein 62