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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008244133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 28002.1 Da PI: 6.7714 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 4.9e-39 | 53 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l+ael XP_008244133.1 53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQVASLQAEL 147 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 a+++++l XP_008244133.1 148 AMVQTQL 154 **99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.923 | 52 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 53 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MADQPVQGDH YTSESRRKGT SGGAGRPTSN TEAAATTTNT STNSTVVVGG AAPCGACKFL 60 RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRQDA VVTISYEAQA 120 RLADPVYGCV STILALQQQV ASLQAELAMV QTQLINSRFA FANALQISSQ QRQQQQQQQQ 180 HEQQQNMALM LQPAYSNNSS ASTNLINMCS FTSNFDLAAK TAPSSQSLDP LQLSRPSQDD 240 EDDEEESQVP LMFAHDRYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 49 | 160 | 7 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 49 | 160 | 7 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008244133.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244133.1 | 0.0 | PREDICTED: LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 2e-80 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A314ZUH9 | 1e-148 | A0A314ZUH9_PRUYE; LOB domain-containing protein 20 | ||||
STRING | XP_008244133.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-66 | LOB domain-containing protein 20 |