PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008244092.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 256aa MW: 28978 Da PI: 9.4904

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008244092.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	13	66	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ XP_008244092.2 13 ERLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 66 7****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.728	9	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-30	11	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	12	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-26	13	67	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-9	14	65	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-10	98	136	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGPSRSDGSA GRERLRWTQE LHDRFVEAVT KLGGPDRATP KGILKAMSVS GLTIYHIKSH 60 LQKYRISKFI PESTSKGKLQ KKNISEMLPN FGATSGAQLN EALKVMQIQV QRRLSDQNEV 120 QKILKHKIEA QARFLDIFSA ERHNNKKNRP ILITKPSKVP LPRTSLPSLC EDSESNAKEF 180 CADSEADKAE IQSSAEQFQA LKRLRLHHQN EEVCEPALNS EWYNQSHSFL LPHEDHINFP 240 WNLAACSSPL VPTCFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-23	11	69	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008244092.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008244092.2	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	4e-47	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A251NWT9	1e-179	A0A251NWT9_PRUPE; Uncharacterized protein
TrEMBL	M5W7R7	1e-179	M5W7R7_PRUPE; Uncharacterized protein
STRING	XP_008244092.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-49	G2-like family protein