PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244040.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 476aa    MW: 53529.6 Da    PI: 4.7547
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244040.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055159175117
                     EEETTTTEEESSHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                     y+Cp+Cgk+++  + L+
  XP_008244040.1 159 YVCPNCGKRYNALDALQ 175
                     9**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134431.3336136IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005313.2E-6637207IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020022.7E-63992IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
SuperFamilySSF467852.48E-53992IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-44194IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.104.1E-21145204IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577832.72E-9145200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSIEPFNKLV KLVGRAFYDD ITKGDNQPKT GRSDNRGIAV VVLDALSRRQ WVREEDLAKD  60
LKLHSKQLRR TLRFFEEEKL VTRDHRRETA KGAKMHNAAV AATIDGLPAK EGEEKVKMHT  120
HSYCCLDYAQ ISDVVRYRVQ RMKKKLKDEL EDKNTVQEYV CPNCGKRYNA LDALQLVSME  180
DEYFHCESCN GELVAESDKL ASQEVGDGDD NARRRRREKL KDLLQKMEAQ LKPIYDQLNR  240
VKDLPAPEFG GLQAWEARAS AAKRAENGES NGMDPSKSSH GLGYGGTPMP FLGDTKVEVD  300
FSGVEGKGKD IKSEADGAGL KVLPPWMIKQ GMNLTKEQRG EVKQEAKMDG SGSLAAPEYS  360
EDKKFNTENN DKNLQDEYLK AYYAALIKRQ EEEEAKKALE SSETRVSDGP SGMSPSRQVG  420
MKSKRDEDEG DDNVDWEEAP ITGNEENFKV NDLNVEADAT AEAEAEDEDD IDWEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fyw_W2e-13924312191TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W2e-13924312191TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5oqm_W2e-13924312191Transcription factor TFIIE subunit
5sva_h2e-13924312191Transcription initiation factor IIE subunit alpha
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008244040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244040.10.0PREDICTED: general transcription factor IIE subunit 1
TrEMBLM5WD060.0M5WD06_PRUPE; Uncharacterized protein
STRINGXP_008244040.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811