PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008244002.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 386aa MW: 43622.5 Da PI: 8.7425 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.4e-17 | 13 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_008244002.2 13 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 62 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.5 | 1.6e-13 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g XP_008244002.2 105 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 155 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 13 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.1E-9 | 13 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-32 | 14 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-11 | 14 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 14 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 14 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.30E-25 | 105 | 165 | No hit | No description |
SuperFamily | SSF54171 | 6.54E-17 | 105 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-9 | 105 | 155 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-31 | 106 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-16 | 106 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.29 | 106 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 145 | 165 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF 60 RGVEADINFS IEDYEEDLKQ MTNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA 120 RMGQFLGKKY VYLGLFDTEI DAARAYDKAA IKCNGKEAVT NFDPSIYENE LNPSSESSGV 180 NPAEHNLDLS LGNSNSKKNN QAFGSSDHGQ NAAMEVQHSA SMQLEADWRN QGLRQKLNLQ 240 RDRSREESDA HRRDGYLETE AMQLLLRTNL HSPAPTEMHK YGQFSRRPNV GDTQMPHIFP 300 PHFNSPNNYH HVQIPSSSEG GRIGSDLSLS MSDHPHQQQW QSGMPTSDIF ATAAASSGFP 360 PQIRPSAQNC WLPTCFCLIS TMSHSI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008244002.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP405836 | 0.0 | KP405836.1 Prunus mume cultivar Sanlunyudie floral homeotic protein APETALA2 (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008244002.2 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | P47927 | 1e-109 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0D4BTY1 | 0.0 | A0A0D4BTY1_PRUMU; Floral homeotic protein APETALA2 | ||||
STRING | XP_008244002.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-103 | AP2 family protein |