PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243985.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 739aa    MW: 81313.4 Da    PI: 7.2419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243985.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-075294347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I  +++  +   q++++++ +
   XP_008243985.1 52 AWTHQEEESFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 94
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.01E-104399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-54697IPR009057Homeodomain-like
PROSITE profilePS5129312.1284899IPR017884SANT domain
SMARTSM007173.5E-44997IPR001005SANT/Myb domain
CDDcd001671.91E-45295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MQIGSTVIVN SEAHPHQGGF FVQDGGPGLA PSTSNHVALQ QPVKKPTRQW AAWTHQEEES  60
FFAALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLGPGLYLDS KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFIEA LEHQLLKDRK KSVRKRPSQG ENCPPNAPST  180
LSNQNRPSGH DNRTVKLVLV DSHNIQKLGP GKASLKRNVN IGVNRSNKGD SSTMKPARQR  240
RKPGALSSAA YKKWEKAAIA GVSLVADAAE HLERAITDKE VEQDRSAAGQ SSAVPVGKIL  300
PPLPAFVQNI DAESGINNCM KLKLQLFPID DGTRRALEND KHNPYLELTL STRKKISSVL  360
DHLNRKWGNS NVASGELTLF HYSVQRDNLM GYPRWMQDSI VSAADVYATI GCPPVFRLRY  420
GWFSNAELGS VGLQTPVASC SNQAEESNEI NGYICVSPNN NFVGDPTEIT SWHKKEAGDQ  480
STSRHRGDVD DLRSITGTAL SAGVWADSLT NISMGDLLSG VSHDLDTNCI DPPVAEGSQC  540
LQQIPFSCDS FDAVIAAHIS RQNKMGCQPT MECHVSSIWD AEETCDAFSF QKNSVFCQEV  600
SSLSAVAPPG ASSVGSDCMV EEISVVERPI DDPPQGGPTD ECQSDPRILE SSVKDFNALT  660
DIYWPESLGP LDLEMPSSKY HSEDFVLSDS LSGLNRLIAS SLDAFQNCSF FGANKREPTA  720
SVEARETASF SDFKIGNGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243985.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X3
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A498IF060.0A0A498IF06_MALDO; Uncharacterized protein
STRINGXP_009334660.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1