PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243920.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 542aa    MW: 58566.9 Da    PI: 9.5792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243920.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-057193123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_008243920.1 71 FVCEICNKGFQRDQNLQLHRRGH 93
                    89*******************88 PP
2zf-C2H2120.00065147169123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_008243920.1 147 WKCDKCSKKYAVQSDWKAHSKTC 169
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-77093No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355110112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.25E-7142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQMMSGDGFS IIPSAIDGFA QEHQLNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL  60
SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDDVS  240
QISQYGQGLI RQDFNGLDHH HQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV  300
TSSSSTAFPD MAQMPSANNL NQLFGSPNAM STFGSSNINL FGSGSASSST STSAANNLSL  360
SSPIQEGGIH KGNSNLVGSG GLSKPPAAPM SATALLQKAA QLGSTRSSNN NNNQGSSSSS  420
SLGVNVMSSS PSSSNTLIRS FSSNMNQNRS NELHQIVQNA NQSGGANSNT SSTLEQLMNN  480
ITHRGSSTIG NLDHQNSLTR DFLGMGGGGG AADQLSHNNR PMFSPQELAK FASSMSQFTG  540
NH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36143207367Zinc finger protein JACKDAW
5b3h_F3e-36143207367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243920.10.0PREDICTED: zinc finger protein JACKDAW
TrEMBLA0A314Y5D70.0A0A314Y5D7_PRUYE; Zinc finger protein JACKDAW
STRINGXP_008243920.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-104C2H2-like zinc finger protein