PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243872.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 327aa    MW: 36529.3 Da    PI: 9.0541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243872.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+ +v+++G g+W + +++ g+ R++k+c++rw++yl
   XP_008243872.1 15 KGPWTPAEDQKLLAYVQKHGHGNWQSLPQRAGLQRCGKSCRLRWRNYL 62
                     79*********************************************7 PP
2Myb_DNA-binding461.2e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +Ed  +++++++lG++ W++I ++++ +Rt++++k++w++
   XP_008243872.1  68 RGNFSLQEDHTIIQLHALLGNR-WSAITAHLP-KRTDNEVKNYWHS 111
                      89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-25765IPR009057Homeodomain-like
PROSITE profilePS5129423.6931066IPR017930Myb domain
SuperFamilySSF466891.91E-3112109IPR009057Homeodomain-like
SMARTSM007171.0E-141464IPR001005SANT/Myb domain
PfamPF002491.3E-171562IPR001005SANT/Myb domain
CDDcd001678.62E-131762No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2366117IPR009057Homeodomain-like
PROSITE profilePS5129418.41467117IPR017930Myb domain
SMARTSM007171.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.7E-1368111IPR001005SANT/Myb domain
CDDcd001671.41E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGKSTHCVAS SGMKKGPWTP AEDQKLLAYV QKHGHGNWQS LPQRAGLQRC GKSCRLRWRN  60
YLRPDIKRGN FSLQEDHTII QLHALLGNRW SAITAHLPKR TDNEVKNYWH SRLKKRLALK  120
GYDPVTHKLK TTIFGFANGS TDDPKTNSNL NHIAQWESAR LQAEARFVRD SELHKQAYHL  180
YNNNDISAAS SILLGHNKDF GPTDQLFGQN APQCLDILRA WESILMSNYS KAAGGQDHVN  240
LFGNHLAGDF EPPIISAISS NGSSLMDCFF HEPVGQCFNE NYGTSITKPF AAVHHNGFKN  300
GACLEDFGLG EIIMQGKKDC PMSGISM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26151177108B-MYB
1gv2_A2e-26151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26151174105C-Myb DNA-Binding Domain
1msf_C2e-26151174105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243872.10.0PREDICTED: transcription factor MYB32-like
SwissprotQ9LE631e-82MY106_ARATH; Transcription factor MYB106
TrEMBLA0A251PXC70.0A0A251PXC7_PRUPE; Uncharacterized protein
STRINGXP_008243872.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1903726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.18e-84myb domain protein 106