PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243867.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 553aa    MW: 63384.2 Da    PI: 10.1398
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243867.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12291121099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + +++ +++p+kf+ ++g++   s  + l+ +sg +W+++l  r+  ++ +l kGW +F k   L+   ++vF ++g+s+f  +v++f++
  XP_008243867.2  29 TCRQSKFRIPNKFLMKYGYD--LSNPVFLKLPSGSEWKIEL--RRWEDKAWLDKGWPKFSKFYSLDYCHSLVFGYEGKSKF--CVRIFDR 112
                     4456779**********999..6667***************..77777789*************************99999..*****98 PP
2B352.59e-17217314199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+  +t+s++++s  ++lp +f  ++    +++s  ++++ ++gr+W++ l+ ++ + +  +++GW +F+++n+Lk+gD++vF l+++ + ++ v
  XP_008243867.2 217 FIVPMTRSYTNRSF-VWLPSNFSFHMtH-LSNNSGNVMFRVLDGRTWSLGLKCERAKPKARFQSGWFKFARDNDLKSGDVCVFVLVDDIRLTFEV 309
                     66778888888776.*******855553.4456669***************999999999**************************998888999 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      +fr+
  XP_008243867.2 310 VIFRA 314
                     99986 PP
3B353.44.6e-17432513487
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                     v +++++ + g l +  kf++eh ++ +++   +l+ ++gr+W v l   k++++ + +++GW +Fv++n+L+ gD++vF l++ 
  XP_008243867.2 432 VVMHPSYIRAGYLHIGAKFIKEHLLN-RGHENAILRVSDGRTWPVSL--GKQGKGiVRFQTGWMKFVQDNQLEIGDVCVFVLTNA 513
                     567888899999***********666.455689**************..777777799**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1914113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2114113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-1419111No hitNo description
PROSITE profilePS5086311.50520113IPR003340B3 DNA binding domain
SMARTSM010198.1E-921113IPR003340B3 DNA binding domain
PfamPF023621.3E-927113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19209314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-18210313IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-17215313No hitNo description
PROSITE profilePS5086313.014216315IPR003340B3 DNA binding domain
PfamPF023623.3E-14217314IPR003340B3 DNA binding domain
SMARTSM010191.2E-6217315IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-21422513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20423520IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464429526IPR003340B3 DNA binding domain
SMARTSM010198.7E-7429526IPR003340B3 DNA binding domain
PfamPF023624.0E-15432515IPR003340B3 DNA binding domain
CDDcd100179.47E-16432524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MASLHRKIHN RPTFSTNTPH FLKIISKGTC RQSKFRIPNK FLMKYGYDLS NPVFLKLPSG  60
SEWKIELRRW EDKAWLDKGW PKFSKFYSLD YCHSLVFGYE GKSKFCVRIF DRNFTEIAYP  120
LTTPEMKDTD EVDDSESEYD DDFSDDSESD FSDDSVEILD KFLPRSRKSS SSGKSEFPAK  180
RHCGGTSTTR RFIKRTRRAK VIALQRAKAF KSDKPSFIVP MTRSYTNRSF VWLPSNFSFH  240
MTHLSNNSGN VMFRVLDGRT WSLGLKCERA KPKARFQSGW FKFARDNDLK SGDVCVFVLV  300
DDIRLTFEVV IFRAIEAANT LSPDVDGEQT MSEMEETDED YDSVELLDYF PPCPKTRKKS  360
PTAPQPSKKN RTCSISTAEN NIRSVGGSSR SQKFLKRRPQ VPRMMNPVTE SGTDRALQRS  420
KAFRSEYPSS TVVMHPSYIR AGYLHIGAKF IKEHLLNRGH ENAILRVSDG RTWPVSLGKQ  480
GKGIVRFQTG WMKFVQDNQL EIGDVCVFVL TNAIKRLIDV VLFRATEAAK CTLSGEGNRR  540
PTISSSQKIK REA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243867.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243867.20.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251Q0F70.0A0A251Q0F7_PRUPE; Uncharacterized protein
STRINGXP_008243867.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-18B3 family protein