PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243775.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 543aa    MW: 58143.4 Da    PI: 5.1474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243775.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09359407355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_008243775.2 359 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 407
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17354425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-11354411No hitNo description
PROSITE profilePS5088815.485356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6359407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDMGDQDKFE LENRNEDPMN YSPGLAPDWR FGGSNLTNTS VGLVSTGNSM AVSKGDLVGS  60
SRPSASMVDS FNPTLWDHPT NSQDLGGFCD INGQTSASTS DRPLEMCWNP PNSMLKGGIF  120
LPNGPGMLPQ SLSQFPADSA FIERAARFSC FNGGSYSDML NPFGVPESMS LYSRGGGMMH  180
WTQEVVAGNG SKAVSCAQSQ RNELNGGDAS RDVSLPIEHG TTEGSPLKNE KKSESLVKSH  240
DEAKHTVGGS GNESDEADFS GGAGQEEPSM LEGTGAEPSS KGSKKRKRSG QANELDHAHA  300
QQPGESAQDA SEIQPKGEQH PASTTNKTTG KQSKQGSQAS DPPKEEYIHV RARRGQATNS  360
HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV  420
NPRLDFNIEG LLAKDILQSR VGPSSTLGFS PDVPVAYPQL HQSQSGLIQA GLPGMGSPSD  480
ILRRAMSSQM TPMTGGFKEP SQLPNVWEDE LHNVVQMSYG ASTPTGSQDV DGSGTPGQMK  540
VEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243775.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243775.20.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49
TrEMBLM5XLG40.0M5XLG4_PRUPE; Uncharacterized protein
STRINGXP_008243775.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-134bHLH family protein