PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243510.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 292aa MW: 32780.4 Da PI: 7.0096

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243510.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.6	3.4e-42	4	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL++k+eg++ +++vi+ + iy+++PwdLp+ +++++ ++w+fF++r++++a+g r++r t++gyWkatg XP_008243510.1 4 LPPGFRFYPTEEELVSFYLQNKLEGRRedlnRVMDRVIPVLYIYEYNPWDLPQfsgeACHGDPEQWFFFIPRQESEARGGRPRRLTTTGYWKATG 98 79***********************665433344799999******656655555777*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s+ ++++glk+t+vfy+grap+g+kt+W m+ey++ XP_008243510.1 99 SPSFVYSSnCNRAIGLKRTMVFYNGRAPHGRKTEWKMNEYKA 140 **9877889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-45	3	178	IPR003441	NAC domain
PROSITE profile	PS51005	48.404	4	178	IPR003441	NAC domain
Pfam	PF02365	1.4E-22	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGDLPPGFRF YPTEEELVSF YLQNKLEGRR EDLNRVMDRV IPVLYIYEYN PWDLPQFSGE 60 ACHGDPEQWF FFIPRQESEA RGGRPRRLTT TGYWKATGSP SFVYSSNCNR AIGLKRTMVF 120 YNGRAPHGRK TEWKMNEYKA VEAHHADQNQ PLIASSSSNT PSAPTLRQEF SLCRVYKKSK 180 CLRAFDRRPL GVEIMSNPSL NLNQTAAAHE GAGHQGQGAG DQGQGSASHS RNPLMGSDQR 240 TNSSSPESSS SGDHHGPQPP SQPAGETGTL PMFIDNEALW DLEQLMINNN WL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-32	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-32	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-32	4	178	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-32	4	178	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-32	4	178	20	168	NAC domain-containing protein 19
3swm_B	4e-32	4	178	20	168	NAC domain-containing protein 19
3swm_C	4e-32	4	178	20	168	NAC domain-containing protein 19
3swm_D	4e-32	4	178	20	168	NAC domain-containing protein 19
3swp_A	4e-32	4	178	20	168	NAC domain-containing protein 19
3swp_B	4e-32	4	178	20	168	NAC domain-containing protein 19
3swp_C	4e-32	4	178	20	168	NAC domain-containing protein 19
3swp_D	4e-32	4	178	20	168	NAC domain-containing protein 19
4dul_A	3e-32	4	178	17	165	NAC domain-containing protein 19
4dul_B	3e-32	4	178	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243510.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243510.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-71	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M5VSR5	0.0	M5VSR5_PRUPE; Uncharacterized protein
STRING	XP_008243510.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	5e-63	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]