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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008243495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 359aa MW: 40330.7 Da PI: 6.6287 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.5e-25 | 124 | 206 | 20 | 100 |
HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 20 kkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 k++ae++ gg+ ++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ ++++ +l+++++r+s XP_008243495.1 124 KQHAEKYvplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERRRSHTDRLFIGWRRRS 206 8999999**97666..5679************************************************88779999******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-29 | 100 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-21 | 104 | 206 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.27E-17 | 106 | 195 | No hit | No description |
SMART | SM01019 | 3.0E-14 | 108 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-21 | 124 | 206 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 142 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MSINHFSSDH PETQWWPNTA HQQQQDPSRP HFLPQFYQDT HHQNYQAWLN SQEQPTPMSP 60 TPPTPTTLNF NLNQNDAESD HANQLQHQLL LQSSPPLDDH DEENEPMFEK PLTPXXXXXX 120 XSXKQHAEKY VPLGGGDSGL LLSFEDESGK SWRFRYSYWN SSQSYVLTKG WSRYVKEKRL 180 DAGDVVLFER RRSHTDRLFI GWRRRSAAAT PPSGGAGESS GSGSAGGWTR MFYSAPHHNN 240 NDGGSSYPAH QYHNHSVAPY PPDCLHAAGS GVQSMSQTTS SVGSSKTLRL FGVNLECQQQ 300 ADHESEPSTP DGSSSLSMSS SQGPTPHHHL YPRAAYDYGA DQRDFSFSRD GNPMRNRRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-33 | 103 | 205 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-33 | 103 | 205 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008243495.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-55 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243495.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein At2g36080-like | ||||
TrEMBL | A0A251N9J5 | 0.0 | A0A251N9J5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243495.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5739 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 1e-39 | B3 family protein |