PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008243279.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 453aa MW: 49873.8 Da PI: 8.5636

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008243279.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	226	271	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn+ Er+RR++i+ ++ L++l+P++ + a++L A+++Ik L XP_008243279.1 226 LHNMSERKRRKKIRGKLGALQQLIPNC-----NTSDRASMLDDAIKHIKAL 271 5***********************8.....3567899********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.18E-15	220	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.907	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	227	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	227	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-12	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MHCPSKNIKR HPRKLTTHIH LGIVTLFIPY QSSWPLALIS LPLNQVLLTV HPNNISECVA 60 FVPCALATWR LPITLHYMTH QVPDWATTTT TEEGDSSKSF QYEDFGPLPD SVVPHHHPHP 120 QTETDHDYSV WNINTSGASG ATGAAEDHNP KCFQEIFEDL SNIQLEPTIT PNAIFSSDKH 180 LVCDFDKGES SSGLKTTSRF METKTVSGEI RQKQDDRPKR TRAAELHNMS ERKRRKKIRG 240 KLGALQQLIP NCNTSDRASM LDDAIKHIKA LKLQIQMMSM GGGALYQASN LSMAGMQSTQ 300 TPQFMSYVPM GTSNAYGMGM GMVNMCYSTT GLPIMCVPSA RFNPLQPATA GFPLMSAPGV 360 LPVNPQLQMP MPFVASQVMP TATTTSRSRN MGQPQFATDF SHTFNYANQG ESSFQNNTNN 420 AASADNQRVP IISKKSKVLA SHVVTPPSSV SDK

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MHCPSKNIKR HPRKLTTHIH LGIVTLFIPY QSSWPLALIS LPLNQVLLTV HPNNISECVA  60
FVPCALATWR LPITLHYMTH QVPDWATTTT TEEGDSSKSF QYEDFGPLPD SVVPHHHPHP  120
QTETDHDYSV WNINTSGASG ATGAAEDHNP KCFQEIFEDL SNIQLEPTIT PNAIFSSDKH  180
LVCDFDKGES SSGLKTTSRF METKTVSGEI RQKQDDRPKR TRAAELHNMS ERKRRKKIRG  240
KLGALQQLIP NCNTSDRASM LDDAIKHIKA LKLQIQMMSM GGGALYQASN LSMAGMQSTQ  300
TPQFMSYVPM GTSNAYGMGM GMVNMCYSTT GLPIMCVPSA RFNPLQPATA GFPLMSAPGV  360
LPVNPQLQMP MPFVASQVMP TATTTSRSRN MGQPQFATDF SHTFNYANQG ESSFQNNTNN  420
AASADNQRVP IISKKSKVLA SHVVTPPSSV SDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008243279.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008243279.1	0.0	PREDICTED: uncharacterized protein LOC103341520
STRING	XP_008243279.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22812	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	3e-19	phytochrome interacting factor 3-like 5