PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243255.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 305aa    MW: 34436.6 Da    PI: 6.9221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243255.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-182067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
   XP_008243255.1 20 RGPWTLEEDTLLIHYIASHGEGHWNSLAKCAGLKRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding50.83.8e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_008243255.1  73 RGNLTPQEQLMILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1751567IPR017930Myb domain
SuperFamilySSF466892.32E-3117114IPR009057Homeodomain-like
SMARTSM007171.6E-151969IPR001005SANT/Myb domain
PfamPF002498.2E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-232174IPR009057Homeodomain-like
CDDcd001671.05E-122267No hitNo description
PROSITE profilePS5129425.21268122IPR017930Myb domain
SMARTSM007175.4E-1572120IPR001005SANT/Myb domain
PfamPF002493.8E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2375121IPR009057Homeodomain-like
CDDcd001674.13E-1277116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAAVTKRACN PNEEEIDLRR GPWTLEEDTL LIHYIASHGE GHWNSLAKCA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLMILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SKRFLDAVRC FWMPTLLQKM EQSSSSYLPT TLSSQNSASP SLSPNCSAPS  180
ISLSTSPPSK VSQIFEHPIN GNSSSVRSPS IFSSDSLISQ LPQTSERLTS PTHAFDHTVY  240
SSSPALNDCY YVDTSSGYAY DMEGLNLDPA SAICDFNNQQ FDCQMTAGDW MLDNMTDTLW  300
NMEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25171224108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243255.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243255.10.0PREDICTED: transcription factor MYB21
SwissprotQ9C9G73e-85MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A314YF020.0A0A314YF02_PRUYE; Transcription factor MYB21
STRINGXP_008243255.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-85myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]