PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008243178.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 294aa    MW: 32826.4 Da    PI: 6.8123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008243178.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06133152120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C+k+F+r  n++ H+
  XP_008243178.1 133 FSCPVCSKTFNRYNNMQMHM 152
                     89*****************9 PP
2zf-C2H213.90.00016218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_008243178.1 218 FGCRKCGKPFAVRGDWRTHEKNC 240
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-5129155No hitNo description
PROSITE profilePS5015710.242133160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-6133152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054133155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
SMARTSM00355220181213IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-5201238No hitNo description
Gene3DG3DSA:3.30.160.608.1E-5204238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140218238IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQTPSTTTTT IDVGTSATSF LEADEDQDEE SIFLSLGPPG QGVPKQYHLI YHQSSSSTQP  60
PPHHHHHHQD QNPNTDHLED GAVTVALHIG PPSTGSTISS SIGNPNHNHI GAPIEGQYWI  120
PSPAQILVGP TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR KGPESLRGTK PASSVLRLPC  180
YCCAEGCKNN IEHPRSRPLK DFRTLQTHYK RKHGSKPFGC RKCGKPFAVR GDWRTHEKNC  240
GKLWFCICGS DFKHKRSLKD HVRAFGDGHA PYGVELCTEP EEEDHLDDED EDDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008243178.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243178.10.0PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-121ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A251R5M61e-178A0A251R5M6_PRUPE; Uncharacterized protein
STRINGXP_008243178.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-108C2H2-like zinc finger protein