![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008243173.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 417aa MW: 45441.8 Da PI: 9.3833 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.2 | 9.5e-14 | 79 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_008243173.1 79 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 127 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 96.6 | 1.7e-30 | 217 | 330 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+ tpsdv+k++rlv+pk++ae+h gg+ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+g XP_008243173.1 217 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAG 311 89****************************999998888888876676799******************************************** PP -EEEEEE-SSSEE..EEEE CS B3 78 DfvvFkldgrsefelvvkv 96 D+v F+++ ++++l++ + XP_008243173.1 312 DIVSFQRSTGQDKQLYIDW 330 ******8766777777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.2E-17 | 79 | 136 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.2E-9 | 79 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.86E-26 | 79 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-20 | 80 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 80 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.231 | 80 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-40 | 208 | 334 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-29 | 215 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.62E-28 | 216 | 319 | No hit | No description |
Pfam | PF02362 | 3.9E-28 | 217 | 330 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-25 | 217 | 334 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 217 | 334 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MDGISLSSTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS 60 EISSGGVGIE AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAAKAYDV 120 AAQRFRGRDA VTNFKPSPTG TGTDDDESDD VEAAFLNTHS KSEIVDMLRK HTYNDELEQS 180 KRNNYGFLDA NGKRARAHGP LGPFGSDRVP KAREQLFEKA VTPSDVGKLN RLVIPKQHAE 240 KHFPLQSGNN FNNHTTTSTS GGSACKGVLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS 300 RFVKEKNLKA GDIVSFQRST GQDKQLYIDW KPRMNVNNNN SSGVGSVPVQ PVQMVRLFGV 360 NIFKIPGSGG GAVVDAATAA IGGGSCNNNI NNVGKRMREM ELLELEFSKK PRIIGAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 9e-58 | 214 | 333 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008243173.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243173.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9C6M5 | 1e-143 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A314YM37 | 0.0 | A0A314YM37_PRUYE; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
STRING | XP_008243173.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-132 | RAV family protein |