PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242968.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 370aa    MW: 41749.9 Da    PI: 6.7062
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242968.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-094290155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGV   + +g W A+I+       +  r++lg+f ++ +Aa  ++ a++kl+g
  XP_008242968.1 42 KKFKGVVEQP-NGHWGAQIYA------NhERVWLGTFNSEIDAAMGYDSAALKLRG 90
                    589***8666.8******999......44**********99*************98 PP
2B379.53.4e-25171262183
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ltpsdv+k++rlv+p k+a ++         g+++ +s +lt++d+  rsW+++++++k+s+++v+tkGW++Fv+ ++L+++D++ F 
  XP_008242968.1 171 FQKELTPSDVGKLNRLVIPSKYACTYfptvseairGKVESCSSQLTFYDRMMRSWTFRFCFWKSSKSFVFTKGWSRFVRTHDLQAKDTIRFL 262
                     99*********************999*********9999**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.43E-2342100No hitNo description
SMARTSM003801.2E-1843104IPR001471AP2/ERF domain
PROSITE profilePS5103217.3594398IPR001471AP2/ERF domain
PfamPF008471.7E-44390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-174398IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-144399IPR016177DNA-binding domain
CDDcd100172.44E-23169261No hitNo description
SuperFamilySSF1019365.62E-25169265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-30169267IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997171289IPR003340B3 DNA binding domain
SMARTSM010193.5E-15171272IPR003340B3 DNA binding domain
PfamPF023625.8E-22171262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEGMSSTVS NSGMKMNTVG GVSDSSLAAN DSTDGACKRV SKKFKGVVEQ PNGHWGAQIY  60
ANHERVWLGT FNSEIDAAMG YDSAALKLRG RDCHRNFPWT ETTFEEQHFQ NQYATEVVLI  120
MIKDGSYQTK FSEFQRSRSG IESVGADVQF GSLARVQSSN GKGELLEDFL FQKELTPSDV  180
GKLNRLVIPS KYACTYFPTV SEAIRGKVES CSSQLTFYDR MMRSWTFRFC FWKSSKSFVF  240
TKGWSRFVRT HDLQAKDTIR FLQCRYKQSG DGNYKEQPHS FCMIQVKKDG GRSNDVSCLV  300
ENNANSYQFD GVMNDGGMMD LDYKFKVEAV SPNIHEDEDG ILLADQKKCF RLFGVEISDV  360
DVLSSHSIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2217026113100DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242968.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A251NH770.0A0A251NH77_PRUPE; Uncharacterized protein
TrEMBLM5VTE80.0M5VTE8_PRUPE; Uncharacterized protein
STRINGXP_008242968.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-80RAV family protein