PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242964.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 485aa    MW: 50480.6 Da    PI: 6.7957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242964.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12278323555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  XP_008242964.1 278 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 323
                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17271333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.78E-13271327No hitNo description
PROSITE profilePS5088817.39273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16275332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9278323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13279328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MQPCSKEMQD MNSLLNSSPS SQLSLQDHHL QLQPQQQSHS HSHSHSRPHL HNSHSQMHPQ  60
ITSPSPAHFD SASHDDFLEQ MLSTLGPSSC SWADDTPPSN SDNVVFTYDD SANLATKFRS  120
QQISAGAGAS KSASASAAAA AAMMLQHQLM MSRSTSADSG FVPMALSLGN GDFDRSNNDV  180
VEGSSSFKSP NPVGGEGASS VQALFNGFSG SLHGGATTQS PNQHFHQPQG GSLQAQNYGG  240
PGAAMNQGPA SGSGGGGGAP AQPRPRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV  300
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADVSSE GGGDCIQASA  360
NGGTRGRSSN GNQTASSSND NSMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA  420
ISTATCHTRN PLIHNNHNNS NAVMASNGGE GPSSPSMSVL TVQSATMGNG GVDGSVKDAT  480
SVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242964.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150354e-34AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242964.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-93BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A251NH780.0A0A251NH78_PRUPE; Uncharacterized protein
STRINGXP_008242964.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]