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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008242623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 331aa MW: 37552 Da PI: 5.1638 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.5 | 5.7e-35 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+++ll++ XP_008242623.1 13 FVMKTYQMVNDPTTDKLISWGQANNSFIVVDPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQTHLLRN 98 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 + r+k+ XP_008242623.1 99 VVRRKH 104 *99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.5E-54 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-33 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 7.3E-19 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-29 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-19 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.3E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MMMEENNNVI APFVMKTYQM VNDPTTDKLI SWGQANNSFI VVDPLDFSQR LLPAYFKHNN 60 FSSFVRQLNT YGFRKVDPDR WEFANEWFLR GQTHLLRNVV RRKHMGKNSY SNSNSTTCLL 120 QGKHEELDDE EIVMEIARLK QEQKALEEEM ENMNKRLEAT ERRPQQMMAF LHKVAEDPEI 180 LPRIMLEKDR TFRAQLGEKK RRVMMITSTS SSSLGMGATN SVETEDEDDG TVGVISSSPE 240 PGFEMDSFYS TSPETSTARE WGRQRRGGGL GRAVQDPYNM NPTVSGHGIG NTSNSGYGYG 300 NRNGGAEVGY LTEEPTPAPP PYPFSLLEGS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-24 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008242623.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008242623.1 | 0.0 | PREDICTED: heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 4e-90 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A251NFN3 | 0.0 | A0A251NFN3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242623.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 5e-93 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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