PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242381.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 296aa    MW: 31840.7 Da    PI: 8.6761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242381.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +vk++G+g Wk I +          R+  ++k++w++ 
   XP_008242381.1  5 KQKWTSEEEEALRAGVKKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.76161IPR017930Myb domain
SuperFamilySSF466894.52E-17263IPR009057Homeodomain-like
SMARTSM007171.0E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-15556IPR009057Homeodomain-like
PfamPF002492.0E-9556IPR001005SANT/Myb domain
CDDcd116601.33E-24657No hitNo description
SMARTSM005262.1E-9156221IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.5E-9156228IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.691158226IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.21E-10159227IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-6160219IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV KKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSG  60
MNPRDKSRAP KAKANADAPA ASVSVSQTSA AASAKRDAPA AATATARRDA PAVTPARRDA  120
PAATPARRDA PAATPVRHDA PAAPVADDSS TGLSDAKTAP AYDAMIFEAL STSTGPNGLD  180
SGAIASFIEQ RNEIPPNFRR SLSNRLRRLV HQEKLEKIQN CYRTKAPKQK DIHPIEESAV  240
AAAYKIADAE NKSFVAAEAV KELERLSEMA EEAESTLQVA AEILEKCSEG EVLLMA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242381.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A251NEE70.0A0A251NEE7_PRUPE; Uncharacterized protein
STRINGXP_008242381.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-28MYB_related family protein