PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008242372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 485aa MW: 53440.9 Da PI: 4.8038 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.6 | 4.5e-34 | 146 | 236 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+++ ++d+e+++++sws++g+sf+v+d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv+ ++ weF++ F+ gkk+ll++ XP_008242372.1 146 FLNKTFQAVDDPETNSVVSWSASGQSFIVWDSYEFSRTLLPKYFKHNNFSSFIRQLNTYGFKKVDPDR---------WEFANGGFQGGKKHLLKN 231 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 ikr+ XP_008242372.1 232 IKRRI 236 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.2E-36 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.9E-33 | 142 | 235 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.6E-58 | 142 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-19 | 146 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-30 | 146 | 235 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-19 | 184 | 196 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 185 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.6E-19 | 197 | 209 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MVVPEGGGGC GGGDGGGGGI SRLPLSSATQ SPKPSNGLEE AENELNKATE EVAPAKEEQK 60 AVTFKGGNCD RSSSSSSSPA LPKPAKEMFC IKEENIDVVV VDDDVDVDGG DDGNFNGGDG 120 GTFSSSSSMA LPKPMDGLHE AGPPPFLNKT FQAVDDPETN SVVSWSASGQ SFIVWDSYEF 180 SRTLLPKYFK HNNFSSFIRQ LNTYGFKKVD PDRWEFANGG FQGGKKHLLK NIKRRIRYNK 240 QPTVGCVDST KTGLEAEIES LKKDQDFLKL EIMNLRQQQK YSQHQLTAIE QRIRNSECKN 300 QRMLFFLTKT ATNSTIVQQL MQKRVIKREL DGSDLRKRRR MPSVQVLESL RDGIDTSLSV 360 DCGTQLEEEL VPMQSLLAEQ VAEAKVAKQN EGPLPAPMID KSGNAVQDLK PHVMARTGTE 420 DMPTAYHGMS ENFLEENVVF DDDEFEVGYS NFYQELEDLI GKPHDWSGYV SHCLMEQAGV 480 IGAMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-24 | 141 | 236 | 12 | 121 | Heat shock factor protein 1 |
5d5u_B | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
5d5v_B | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
5d5v_D | 2e-24 | 141 | 236 | 21 | 130 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 228 | 234 | LKNIKRR |
2 | 335 | 339 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008242372.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008242372.1 | 0.0 | PREDICTED: heat stress transcription factor A-2-like | ||||
TrEMBL | A0A251NEI0 | 0.0 | A0A251NEI0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242372.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10676 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-79 | heat shock transcription factor A2 |