PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242363.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 569aa    MW: 63660.1 Da    PI: 8.2091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242363.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12377421554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + Er+RR+++N++f++L++llP+      +K +Ka++L+ A eY+ sL
  XP_008242363.1 377 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLTTAREYLISL 421
                     8899********************97.....8**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.07E-12370426No hitNo description
PROSITE profilePS5088815.364372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-16374441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15376439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10377421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-14378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDTAFQLDEG SRASFLRLIM QSFGCFYICL WSYMPPPSNC LFFLDGVYDE ENQPSSSSGN  60
QARRLFDEYR QSIFNVVENE CVPGFAFRNS LPNLELQEID LQRLASSSVQ RQFYQEARIK  120
TAVFMGCKSG EIELGLSNVP QINIKRELMR NWLPEAFTRQ LSPHTAVANR PNNPDQQNPL  180
SSSSSSFRSL STMDSPEYSS ILFNIPTTTT TSHINIPEVF TQPAPNPLQP INIVTSLEPM  240
PPLNIISSSI TSPHQQALQA FSRIRNTQFP NPEIEDAAMT RAILAVLSAS PSSSSSHQPP  300
PQTNVPPSSS TAHFLTPKTS AFKTYNSSPL APRTPKSANV RKQIMLKRSI SFLRSLNLMR  360
LREGIQATRP TSSQLHHMIS ERKRREKLNE SFHTLKSLLP PGTKKDKASV LTTAREYLIS  420
LRAQVAELSK RNQQLEARLP PAAKEAYNEE AAAAAGSSNE RVSVTLTRVA SESTPDQDQQ  480
IFDLQVVLRS VECCTEDMVI RILEFLKRVN NVSLMSMEAN TWMSGSDSNV NRVILRLRVD  540
QGTEWDEAAF QEAVRRVVAD LALNNCSNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385ERKRRE
2381386RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008242363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242363.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A251NGJ30.0A0A251NGJ3_PRUPE; Uncharacterized protein
STRINGXP_008242363.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-70bHLH family protein