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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 668aa MW: 77438.7 Da PI: 7.3659 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.7 | 1.3e-20 | 42 | 125 | 4 | 90 |
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 n+YA + GFs+rk + ++ +n+ + +r++ Cskeg++++e+ e ++ +r trtgCka ++ + + +g w++++++l+HnHe+a XP_008241738.1 42 NTYAFRKGFSIRKGNIRRDAQNK-VRQRDYFCSKEGFQSDEDLC-EVKKMRRLDTRTGCKALIRFTVD-NGIWKISHINLDHNHEFA 125 89**************9996666.*****************999.999999****************9.***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-18 | 42 | 125 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.3E-31 | 247 | 341 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.249 | 526 | 562 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.1E-5 | 535 | 561 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.0E-5 | 537 | 564 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MDYTCQGKIL ERSDKEEIFD AIDELKVGME VSNEAEAYNL CNTYAFRKGF SIRKGNIRRD 60 AQNKVRQRDY FCSKEGFQSD EDLCEVKKMR RLDTRTGCKA LIRFTVDNGI WKISHINLDH 120 NHEFAKPEER QFLRSGRHIP CVRAAILGPK VDESTRPTKS YPYLGKKFGN AENVGSTNKD 180 CHNYLQRNKE EMLEGGDGQS LINYFKHKQM EDPSFFYSVQ VDQYNRITNY FWRDGRSRLD 240 YDCFGDVVCF DTTFRTKKYN LICAPFVGVN HHCKNVLFGC AFVSDESTDS FVWLFETFLE 300 SMGYKQPKTI FTDVGDAMAN AIAVMLRETR HRLCIWHISK NATQYIGSHY SNHEFKEHFN 360 KCFHDCLTEA EFEATWNDLI RKFNLENNSW LQELNSLREK WCPAFSLDTF TANFRSSNRG 420 ESITSTFHQI STKTMDLIGL VQHYEKKTKV VRSAELEEDF RCKNGMPHLR ANSGIFKHAA 480 SEYTIKMYSF FENELMSIFG VRMIEVGNDG NQYIYEAIEE GHPRVYIIEY NSATSMVSCS 540 CKLFESIGLL CRHALKVLDL KNFTSIPTRY IVKRWTKGAK KRIVESSDLY ESSYKMGKSA 600 QSLRLSELMH EGNNVFSIGS LCDSGTRIVK QKLVEAMKLL ESDEETTSMQ GNLNKVDDQF 660 VRDVLLDN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241738.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241738.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_008241739.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A251NC83 | 0.0 | A0A251NC83_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241738.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-112 | FAR1-related sequence 5 |