PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 668aa    MW: 77438.7 Da    PI: 7.3659
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241738.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.3e-2042125490
            FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     n+YA + GFs+rk + ++  +n+ + +r++ Cskeg++++e+   e ++ +r  trtgCka ++ + + +g w++++++l+HnHe+a
  XP_008241738.1  42 NTYAFRKGFSIRKGNIRRDAQNK-VRQRDYFCSKEGFQSDEDLC-EVKKMRRLDTRTGCKALIRFTVD-NGIWKISHINLDHNHEFA 125
                     89**************9996666.*****************999.999999****************9.***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1842125IPR004330FAR1 DNA binding domain
PfamPF105515.3E-31247341IPR018289MULE transposase domain
PROSITE profilePS5096610.249526562IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-5535561IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MDYTCQGKIL ERSDKEEIFD AIDELKVGME VSNEAEAYNL CNTYAFRKGF SIRKGNIRRD  60
AQNKVRQRDY FCSKEGFQSD EDLCEVKKMR RLDTRTGCKA LIRFTVDNGI WKISHINLDH  120
NHEFAKPEER QFLRSGRHIP CVRAAILGPK VDESTRPTKS YPYLGKKFGN AENVGSTNKD  180
CHNYLQRNKE EMLEGGDGQS LINYFKHKQM EDPSFFYSVQ VDQYNRITNY FWRDGRSRLD  240
YDCFGDVVCF DTTFRTKKYN LICAPFVGVN HHCKNVLFGC AFVSDESTDS FVWLFETFLE  300
SMGYKQPKTI FTDVGDAMAN AIAVMLRETR HRLCIWHISK NATQYIGSHY SNHEFKEHFN  360
KCFHDCLTEA EFEATWNDLI RKFNLENNSW LQELNSLREK WCPAFSLDTF TANFRSSNRG  420
ESITSTFHQI STKTMDLIGL VQHYEKKTKV VRSAELEEDF RCKNGMPHLR ANSGIFKHAA  480
SEYTIKMYSF FENELMSIFG VRMIEVGNDG NQYIYEAIEE GHPRVYIIEY NSATSMVSCS  540
CKLFESIGLL CRHALKVLDL KNFTSIPTRY IVKRWTKGAK KRIVESSDLY ESSYKMGKSA  600
QSLRLSELMH EGNNVFSIGS LCDSGTRIVK QKLVEAMKLL ESDEETTSMQ GNLNKVDDQF  660
VRDVLLDN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241738.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_008241739.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251NC830.0A0A251NC83_PRUPE; Uncharacterized protein
STRINGXP_008241738.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-112FAR1-related sequence 5