PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241644.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 517aa MW: 54043.4 Da PI: 8.3749

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241644.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_008241644.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.2	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_008241644.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-7	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.3E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	61	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.45E-7	132	157	No hit	No description
SMART	SM00355	150	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MPTDLDNSST ASGEASVSSS GNQPAPPKPT TKLKKKIPHV TDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQSA NSPPQPTPQP PVPSQATTSS 240 VPSQSAGLLS SPMPSTQNPV TELAENPTQT MEEAPAVTGP KGNCSSSNSS SSNGSTSSSV 300 FASLFASSTA SASLQPLQPP AFTDLVQVMG NPDSTTDLAP SSSVEPISLG LSTSHGSSLF 360 GPAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL RGFGIMSSSS SSAQQESLQW 420 SQRQAEPDSA SVAAGLGLAL PCDGGSGWKE LMMGSPSMFG PKQTTLDLLG LGMAAGNSPS 480 GGLSALITSI GGGLDVAAAA ASFGGGEYSG KDLARGS

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MPTDLDNSST ASGEASVSSS GNQPAPPKPT TKLKKKIPHV TDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARGHTQTP TQTQTEVNLN SESDPKAQSA NSPPQPTPQP PVPSQATTSS  240
VPSQSAGLLS SPMPSTQNPV TELAENPTQT MEEAPAVTGP KGNCSSSNSS SSNGSTSSSV  300
FASLFASSTA SASLQPLQPP AFTDLVQVMG NPDSTTDLAP SSSVEPISLG LSTSHGSSLF  360
GPAGQERRQY APPPQPAMSA TALLQKAAQM GAAATNASLL RGFGIMSSSS SSAQQESLQW  420
SQRQAEPDSA SVAAGLGLAL PCDGGSGWKE LMMGSPSMFG PKQTTLDLLG LGMAAGNSPS  480
GGLSALITSI GGGLDVAAAA ASFGGGEYSG KDLARGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-36	133	194	3	64	Zinc finger protein JACKDAW
5b3h_F	7e-36	133	194	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241644.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241644.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9LVQ7	0.0	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	M5VVT9	0.0	M5VVT9_PRUPE; Uncharacterized protein
STRING	XP_008241644.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-103	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]