PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 312aa MW: 35683.5 Da PI: 9.3612 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.7 | 1.1e-14 | 10 | 96 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l + +++ +l +p f ++ g+++++s l + +W+v++ +k ++++++kGWkeFv+++gLk +f++F++ g+s+f v v XP_008241585.1 10 FFKAL--VHDFSN-QLKIPPAFYVHFaGEVPRRS----LLRTPAGTWNVNV--EKVNDGFFFQKGWKEFVHDHGLKLCEFLIFRYAGHSKF--DVDV 95 67777..556665.5********88876666654....55566679*****..99999****************************99999..5544 PP E CS B3 97 f 97 + XP_008241585.1 96 Y 96 4 PP | |||||||
2 | B3 | 66.2 | 4.9e-21 | 218 | 309 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ff + +++ + ++grlv+pk+f +++ gkk k ++l+d s r+W vk+i +++s+r l++GW +Fv++ Lk+gD++vF+l++r+++ ++v+ XP_008241585.1 218 FFRAIMHKAYVNKGRLVIPKSFHNSCIGKK---KYVRLQD-SKRRWLVKCISKRNSSR--LSAGWYQFVRDRALKVGDVCVFELIDRNDAVMKVS 306 677778888889999********9995553...4699999.899******88888777..9**************************9*99**** PP EE- CS B3 96 vfr 98 +fr XP_008241585.1 307 IFR 309 998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-19 | 4 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-19 | 6 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.35 | 7 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.58E-14 | 8 | 96 | No hit | No description |
Pfam | PF02362 | 1.5E-12 | 10 | 93 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-11 | 10 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-23 | 211 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-20 | 213 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.98E-19 | 217 | 309 | No hit | No description |
PROSITE profile | PS50863 | 13.761 | 218 | 311 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.5E-19 | 218 | 309 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-14 | 219 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MARRRRKPSF FKALVHDFSN QLKIPPAFYV HFAGEVPRRS LLRTPAGTWN VNVEKVNDGF 60 FFQKGWKEFV HDHGLKLCEF LIFRYAGHSK FDVDVYGRNG CKKEFVMAVS KNDRSLEEGH 120 DNAIHGTQNV DGQGFGSADG TTTSQAICAI KNEVIDVESD TSMDIDEPDT QEDQLNEDSE 180 IGLPRELGST EHFYSRAQME NPSEALEAAK KFSSKHPFFR AIMHKAYVNK GRLVIPKSFH 240 NSCIGKKKYV RLQDSKRRWL VKCISKRNSS RLSAGWYQFV RDRALKVGDV CVFELIDRND 300 AVMKVSIFRC NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-20 | 200 | 311 | 30 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-20 | 200 | 311 | 30 | 143 | B3 domain-containing transcription factor VRN1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241585.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241585.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A251NBG2 | 0.0 | A0A251NBG2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241585.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16060 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-33 | B3 family protein |