PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241583.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25357.3 Da PI: 8.299 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.3 | 2.4e-17 | 37 | 131 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk+ ++ ++++ + l++pkkf+ ++g + +++ l l + +g W+v l r+ +g +++ kGW +F + L+ g +vF ++g+s+f v XP_008241583.2 37 FFKIILNGNTSSDAKLRIPKKFVMKYGDDLSNPVSLELLSGNGSAWKVDL--RRLDGDVWFDKGWANFFEFYSLDRGHWLVFGYQGNSKF--QVC 127 89999999******************8888899*****************..**********************************9999..999 PP EE-S CS B3 96 vfrk 99 +f++ XP_008241583.2 128 IFDR 131 9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-22 | 30 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-22 | 30 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.71E-18 | 35 | 130 | No hit | No description |
SMART | SM01019 | 4.4E-11 | 37 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 37 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 37 | 131 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNYFQSFEIR YHRSSAIASL PQEIDDWPTF SPTTPHFFKI ILNGNTSSDA KLRIPKKFVM 60 KYGDDLSNPV SLELLSGNGS AWKVDLRRLD GDVWFDKGWA NFFEFYSLDR GHWLVFGYQG 120 NSKFQVCIFD RTCIEVDYPL RKQKMEETDD TDDDFHEDSS DDSVKEQPDD STCPRKTRKK 180 SSLPCPRPQK KNRTSSRGKY GYPAKLGSGI TSSTRRFEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241583.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241583.2 | 1e-163 | PREDICTED: B3 domain-containing protein At1g49475-like | ||||
TrEMBL | A0A251NBE9 | 1e-125 | A0A251NBE9_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241583.1 | 1e-115 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-22 | B3 family protein |