PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241582.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 19007.7 Da PI: 5.6738 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.2e-11 | 13 | 75 | 35 | 99 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++ le ++g +W vkl r + g+++l+kGW eF+k Lk g + F++ g+ s f +v++f + XP_008241582.1 13 KIFLEVPDGAVWPVKL-TRPCNGEIWLQKGWPEFAKFYSLKHGCLLFFRYGGEhSHF--RVRIFMR 75 6999************.5888888**************************9976777..9998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.617 | 1 | 76 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-13 | 5 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-12 | 7 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-9 | 13 | 75 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.23E-14 | 13 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MLVMEYGDLM ADKIFLEVPD GAVWPVKLTR PCNGEIWLQK GWPEFAKFYS LKHGCLLFFR 60 YGGEHSHFRV RIFMRNTLEM KYFSSSTDDE AEGNSNPSSE TEGQGNKHDR DLALRTFAKT 120 ELEDLAYSKA LSFKSNNPFL CDENASIILI NSPDMCKRCF IAADLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241582.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241582.1 | 1e-123 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
TrEMBL | A0A251NDG6 | 1e-103 | A0A251NDG6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241579.1 | 1e-111 | (Prunus mume) | ||||
STRING | XP_008246241.1 | 1e-112 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-14 | B3 family protein |