PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 20643.1 Da PI: 9.9539 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0014 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H XP_008241560.1 43 FECKTCNRKFPSFQALGGHRASH 65 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-12 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.12E-8 | 42 | 118 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-11 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.34 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MKRMREDEVG LGMKGLDMEK FLMLLSCGME TKFRKCSSPN DVFECKTCNR KFPSFQALGG 60 HRASHKRPRT SMDHDQQSET RKGSNLMATK NKPKAHECSI CGLEFGMGQA LGGHMRRHRA 120 SNMNLGFSSK VPDEVVVASK IPVLKRSSSK RIMCLEMDLN LTPLENDLKL LFGEMAPKVD 180 AFVS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241560.1 | 1e-134 | PREDICTED: zinc finger protein ZAT11 | ||||
TrEMBL | M5WM45 | 1e-128 | M5WM45_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241560.1 | 1e-133 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 7e-42 | C2H2 family protein |