PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241504.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 497aa    MW: 55559.9 Da    PI: 6.7379
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241504.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-19138228199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesgr+ ++k+i  k++    l++GW++F+ +++L egD++vF+l++ ++f  +v 
  XP_008241504.1 138 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQCQLKYIAYKTG----LSAGWRQFAASHNLIEGDVLVFQLVEPTKF--KVY 224
                     89************************644..678****************666665....9**********************9876666..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_008241504.1 225 IIRS 228
                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-21130229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-24131229IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-28136227No hitNo description
PROSITE profilePS5086312.802138229IPR003340B3 DNA binding domain
SMARTSM010195.7E-22138229IPR003340B3 DNA binding domain
PfamPF023629.7E-17138228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGRNVGKKET QLHQGKEEKP PQTQSSKEEG HPTPAQLSKP RPRPKPNTNP KPSPLNPAKL  60
KKPNKPNEKE VEHSMPMKEL SNTQIKNMLG QAGKSPALSN TQYEFPVDGS PSRGQAKSSA  120
VIQAQEVRSK LEPRFPSFVK SLVRSHVASC FWMGLPSLFC KSHLPDKDIT MTLEDESGRQ  180
CQLKYIAYKT GLSAGWRQFA ASHNLIEGDV LVFQLVEPTK FKVYIIRSND LTEVDGGLGL  240
LNLDSHTKRK DADKDNAETG TEACNDATRK RAHSPPSEAQ KKKKIGLQPV EQSEDDSDEV  300
DSEVLEESKS PDTALQFEDI QSFENFSILV NGLLVDSELP EDVRRKYYKL CCSQNAFLHE  360
NVVEGMNHKL VVGAISETVN IADAIKACKL TTTWDDFVSW DKYLKAFELL GMNVGFLRDR  420
LCRLANLSND SGAAVEARMY KEAKIERSQA GIGIRNIEVK LEELRDVCDE FGAAIESLRS  480
KAEVYTLKFH EEVTSPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268283RKRAHSPPSEAQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241504.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251ND490.0A0A251ND49_PRUPE; Uncharacterized protein
STRINGXP_008241504.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-38B3 family protein