PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241488.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 268aa    MW: 30110.4 Da    PI: 10.0748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241488.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08180220954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_008241488.2 180 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13172229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.86E-11173225No hitNo description
SuperFamilySSF474593.4E-14175229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-6181220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDVDMLKSSS SSSSAGDDHH HHHHMDMMTM MMQMQMQKQQ SPDHFCDSYH NSSNPTFPEI  60
DFTWGSNSNI TNNIETISSL PIFHNPNAVS SQHSQPTLIN PALPSSVSFM GNQIQEPLTP  120
RLIKTSPPPT SYEKRNSMAA MREMIFRIAA MQPIQIDPES VKPPKRRNVK ISKDPQSVAA  180
RHRRERISEK IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQTLERA GADRPIGIGF  240
QGAGQLGNVN YSALLRPSHL VGSMQMLR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241488.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241488.20.0PREDICTED: transcription factor HEC2
SwissprotQ9SND48e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLM5VUU41e-168M5VUU4_PRUPE; Uncharacterized protein
STRINGXP_008241488.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]