PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241377.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 311aa    MW: 34064.2 Da    PI: 7.8782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241377.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076130152123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_008241377.1 130 YQCKTCDRCFSSFQALGGHRASH 152
                     9***********99999998887 PP
2zf-C2H212.60.00043217239123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg  F++   L  H+r+H
  XP_008241377.1 217 HECSVCGAEFTSGQALGGHMRRH 239
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.29E-9129152No hitNo description
PfamPF139128.5E-10129154IPR007087Zinc finger, C2H2
SMARTSM003550.11130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576676.29E-9212239No hitNo description
Gene3DG3DSA:3.30.160.607.0E-4215239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-12216240IPR007087Zinc finger, C2H2
SMARTSM003550.012217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743217239IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMMMMMMDGA DHQDHEEGVM GYKDQSQMMI IKGKRTKRQR LASPVAHAST ATASSSSSAG  60
HDHQHQVLVG PTETSPATSA DQFTEISTEE EEDMANCLIL LAQGNSTPKT QHPIFVHNNK  120
ASASAGLYVY QCKTCDRCFS SFQALGGHRA SHKKPNKANM NITQDNKKAL SFVEEAEEYD  180
RFNNTSTTLS LQISNRDYRA SSSAATPVIN SKANKVHECS VCGAEFTSGQ ALGGHMRRHR  240
TFMNTTTTTA TAAAMSSPQP QSGSKRPRSI LQLDLNLPAP EEERLETKFP FGPKKEQVIV  300
FSTSPLVGCH Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241377.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241377.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A251NAP40.0A0A251NAP4_PRUPE; Uncharacterized protein
STRINGXP_008241377.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-57C2H2 family protein