![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008241324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 527aa MW: 56932.7 Da PI: 6.6976 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 57.9 | 2.6e-18 | 147 | 233 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.er.spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ ++er +r s qCk+k +nl+kryk ++++++++ s s++p+f+++e XP_008241324.1 147 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAIVSERCDrQReSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWFKKME 233 5*************************************665432555999*******************9998.566679*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-20 | 145 | 235 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 6.3E-73 | 276 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 33.961 | 286 | 521 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 9.03E-58 | 286 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 6.00E-124 | 289 | 521 | No hit | No description |
Pfam | PF00696 | 1.5E-25 | 290 | 500 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 527 aa Download sequence Send to blast |
MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD 60 KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKGHSD ELSDGGGGGS 120 GSAPYSYKRS KPSSAAAIGE YRKDREEWSD SAISCLLDAY TDKFTQLNRG NLRGRDWEEV 180 AAIVSERCDR QRESVDQCKN KVDNLKKRYK LERQRMNNGG VSASHWPWFK KMENIVGNSL 240 PGKAVSDEDK GVSSPGTTPR QSKSRNAMAI ISPVSQMNKV KSALSIKWRR VVFKISGAAL 300 AGAAPNNVDS KLAMLIAREV ALACHNGVEV AIVVGGRNFF CGDAWVTATG LDRSTAYQIG 360 MMATVMNSVL LQSALEKMGV QTRVQTAFSM QEVAEPYSRQ RAIRHLEKGR VVIFAGIGAG 420 TGNPLFSTDT AAALRALEIQ AEAVLKGTNV DGVYDCNSQD NNFTFEHISF RDVVTRGATS 480 MDSMALTFCE ENRIPVVVFN LLEPGNISKA LCGEQVGTLI DQAGRIS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_B | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_C | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_D | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_E | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_F | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_A | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_B | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_C | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_D | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_E | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_F | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008241324.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241324.1 | 0.0 | PREDICTED: uncharacterized protein LOC103339757 isoform X1 | ||||
TrEMBL | A0A251NAG3 | 0.0 | A0A251NAG3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241324.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |