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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 286aa MW: 31184.2 Da PI: 4.789 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 259 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++sF++ L++H + H XP_008241307.1 259 FNCQSCNRSFNSDVALQSHTKAkH 282 78*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.89E-5 | 253 | 281 | No hit | No description |
PROSITE profile | PS50157 | 11.946 | 259 | 286 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 261 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA 60 EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLSKGDN SDSEEDVALT VVDNGKPKLS 120 TEDTKKAIKS EQKEASSDDD ESDDEEVGAD QTKVKFEEGS SEDEDESDDD DADSEDETDD 180 SEEEDEETPK KADVSKKRPA ESAKILANNK KAKFVTPEKT DSKKGSVHIA TPYPAKLAGK 240 KPATSDQSKQ QAPKSGGTFN CQSCNRSFNS DVALQSHTKA KHSAAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241307.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241307.1 | 0.0 | PREDICTED: histone deacetylase HDT1 isoform X4 | ||||
TrEMBL | M5VQN7 | 1e-156 | M5VQN7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241303.1 | 1e-166 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 3e-28 | histone deacetylase 3 |