PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 31271.2 Da PI: 4.7302 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 260 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C++sF++ L++H + H XP_008241305.1 260 FNCQSCNRSFNSDVALQSHTKAkH 283 78*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.94E-5 | 254 | 282 | No hit | No description |
PROSITE profile | PS50157 | 11.946 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 262 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA 60 EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLSNTGD NSDSEEDVAL TVVDNGKPKL 120 STEDTKKAIK SEQKEASSDD DESDDEEVGA DQTKVKFEEG SSEDEDESDD DDADSEDETD 180 DSEEEDEETP KKADVSKKRP AESAKILANN KKAKFVTPEK TDSKKGSVHI ATPYPAKLAG 240 KKPATSDQSK QQAPKSGGTF NCQSCNRSFN SDVALQSHTK AKHSAAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241305.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241305.1 | 0.0 | PREDICTED: histone deacetylase HDT1 isoform X3 | ||||
TrEMBL | M5VQN7 | 1e-160 | M5VQN7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241303.1 | 1e-170 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 2e-28 | histone deacetylase 3 |