PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008241284.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 543aa MW: 61857 Da PI: 6.8908

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008241284.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.8	1.6e-29	127	212	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_008241284.1 127 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 212 8*********************************998***************************97..66678*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	126	185	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-19	127	213	No hit	No description
CDD	cd12203	2.48E-20	127	192	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEMEDQYNMS DLRQLMNGGN RAHFPSIPLQ AATELFPSHR VPPLTAPPAH HHQQHHHYEQ 60 LMMMGRPQPH DHHIINPRGL HHHEFRSPDS AAGGGAAANS ATVTASLSGG GGLMEAEAGG 120 DIGGSGRWPR QETLTLLEIR SRLDFKFKEA NQKGPLWDEV SRIMCEEHGY QRSGKKCREK 180 FENLYKYYKK TKEGKAGRQD GKNYRFFRQL EALYGETTNS VVSTSLPEAH FIGNNSNNNN 240 LRYQTTINAQ ANQEITTPYH HSTDQKHCDS LSLSNSSEFE TSSSEDQDNN DVSAAAMDDD 300 SPDIKTMRKR RGGRGWKVKI KEFIDAQMRK LMEKQEEWLE RLMRTLEQKE RERMVREEEW 360 RKQEVERVEK EHKFWAKERA WIEARDKALM EALHKLTGGS SSTDQAKANY SSPSPDHDHD 420 QHHHHHHHHH QTSSDHDQIV HNTSSARELL NKKRKENVNS KSSACYFQNN ESCSSLYSSQ 480 GGYCAEMNDH EQGGTNDGSN NSPCGNANVG NAVQDNCFPF LMSEGENLWE NYGLKLSKGS 540 QNQ

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEMEDQYNMS DLRQLMNGGN RAHFPSIPLQ AATELFPSHR VPPLTAPPAH HHQQHHHYEQ  60
LMMMGRPQPH DHHIINPRGL HHHEFRSPDS AAGGGAAANS ATVTASLSGG GGLMEAEAGG  120
DIGGSGRWPR QETLTLLEIR SRLDFKFKEA NQKGPLWDEV SRIMCEEHGY QRSGKKCREK  180
FENLYKYYKK TKEGKAGRQD GKNYRFFRQL EALYGETTNS VVSTSLPEAH FIGNNSNNNN  240
LRYQTTINAQ ANQEITTPYH HSTDQKHCDS LSLSNSSEFE TSSSEDQDNN DVSAAAMDDD  300
SPDIKTMRKR RGGRGWKVKI KEFIDAQMRK LMEKQEEWLE RLMRTLEQKE RERMVREEEW  360
RKQEVERVEK EHKFWAKERA WIEARDKALM EALHKLTGGS SSTDQAKANY SSPSPDHDHD  420
QHHHHHHHHH QTSSDHDQIV HNTSSARELL NKKRKENVNS KSSACYFQNN ESCSSLYSSQ  480
GGYCAEMNDH EQGGTNDGSN NSPCGNANVG NAVQDNCFPF LMSEGENLWE NYGLKLSKGS  540
QNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008241284.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008241284.1	0.0	PREDICTED: trihelix transcription factor PTL
Swissprot	Q9LZS0	5e-97	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A251NA98	0.0	A0A251NA98_PRUPE; Uncharacterized protein
STRING	XP_008241284.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	5e-78	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]