PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008241197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 961aa MW: 105568 Da PI: 7.2233 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 394 | 494 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ +++ XP_008241197.1 394 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIKIQDVKGNEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PGGR 486 99**************************555556667***************9989999999***9.********************887.7777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 lv++++++ XP_008241197.1 487 LVMGFRKA 494 88877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-29 | 390 | 495 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-20 | 391 | 494 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-23 | 392 | 493 | No hit | No description |
Pfam | PF02362 | 5.0E-16 | 394 | 493 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-23 | 394 | 495 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.941 | 394 | 495 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.674 | 659 | 709 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.3E-12 | 664 | 706 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 961 aa Download sequence Send to blast |
MGSKICMNVL CGTTNTHEWK KGWSLRSGGF AHLCFKCGAA YEKLVYCDKF HAGESGWRDC 60 SLCRKPLHCG CIVSKSLYEC LDYGGVGCIS CAKSSQPRVI QNDDVLNGFG GLKISNYSDR 120 QSTVVQNGAF SNTVDEGKLL QLCKIMEANE SNLLPQPQRG DINVSLVQKK QEEVINHKGE 180 VSLGFSSTTQ PSIGSLTFSK SDNGRTMMED MNKSSSQPSL SMTLGSPSAT PSFVQPFPGG 240 LVDGREQSKT PSSFQQGHGR EQGTTPSFQQ GLVDGREQSK TSSSFQQGLV DGREQSKTPS 300 SFQQGLVDGR EQSKTPSSFQ QGQKSRPILP KPLKPGVTMS SETNKGGFPN VRVARPPAEG 360 RGKNQLLPRY WPRITDQELQ KLSGDLNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF 420 PPISQSEGLP IKIQDVKGNE WMFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVTFSR 480 IDPGGRLVMG FRKASKSLDM QDPQTSILPN GSTPGETSCP SVVENPATGS GHPGLFQTNT 540 GSKDPHLHAL SEHLHLTDGD MSLHRNDYHG HRTSEDLLQQ PVSNSDKKRA RNIGPKSKRL 600 LMHSEDVLEL RLTWEEAQDL LRPPPSVKPS IVTIEDHEFE EYDEPPVFGK RSLFTASSSE 660 RQEQWAQCDD CSKWRRLPAD VLLPPKWTCS ENSWDTSRRL CSAPEEMSQK DFDSLLRASK 720 DLKKRRIIEN CSETQEHEPS GLDALASAAI LGDNVVDSGE QSVGATTRHP RHRPGCTCIV 780 CIQPPSGKGK HKPTCTCNVC LTVRRRFKTL MMRKKKRQSE REAENAQKDN NNHKDESEIN 840 GTSTEVGLHM NHSSENGGCQ SRIEADVAES STAGQIDLNC EPNPYVQSSG LTLLRLADAV 900 SQPLNNYMKE SCLANMMCEP QAGIGSSLLT QATDESERRL SNEGCLSAVA AWDCEGRGAA 960 D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-71 | 372 | 501 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 803 | 814 | RRRFKTLMMRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008241197.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241197.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700 | ||||
Refseq | XP_016652569.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700 | ||||
Refseq | XP_016652574.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A251NK06 | 0.0 | A0A251NK06_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241197.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10323 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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