PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241058.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 710aa    MW: 77740.2 Da    PI: 7.3363
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241058.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094034401954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_008241058.1 403 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 440
                     554459******************************88 PP
2BELL122.22.2e-39267338172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+kk kL+s+l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  XP_008241058.1 267 ERQEIQMKKGKLISMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 338
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-65193336IPR006563POX domain
PfamPF075261.5E-49198335IPR006563POX domain
PROSITE profilePS5007112.195381444IPR001356Homeobox domain
SMARTSM003895.3E-9384448IPR001356Homeobox domain
CDDcd000863.44E-12384445No hitNo description
SuperFamilySSF466898.55E-17385450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28387450IPR009057Homeodomain-like
PfamPF059202.9E-18401440IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MATYFHHGNS SEIQASSDGA LQTLVLMNPG YVQYSDTPPP PPHQQQQQPH QPPSAGNLVF  60
LNSPTNSLPH HPSTLSHAPP SHAQQFVGIP LSHDPNNNNS PSMHQAHPDL SSLHAFMPRI  120
QTQYALWNSI DPNTAARDTP RAQQGLSLTL SSQQPGFGSF RGATSDREVP SGEDIRVSSG  180
SNSSASGVTN GVSGMQSVLL SSKYLKAAQE LLEEVVNVGN GIRTDLPKKG SGQQSKVVAE  240
SSLAAAGDSS VGGEGSGKRA AELSTAERQE IQMKKGKLIS MLDEVDQRYR QYHRQMQMVI  300
SSFEQAAGIG SARTYTALAL QTISKQFRCL KDAITNQIRA ANKSLGEEDC AAGKIEGSRL  360
KYVDHQLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA WLFEHFLHPY PKDSDKHMLA  420
KQTGLTRSQV SNWFINARVR LWKPMVEEMY LEEVKEHEQN GSSEKMSKSN EDSASKSTAP  480
QDTENNQTTS TFNSKQENST NHNNIAAPPS MSISTPSTSP TNMVRNPSGF SLIGSSELDG  540
ITQGSPKKPR STEFMQSPNS SVPCMNMDHK AQEVNNEQVS MKFGDERQGR DGYSFMGGQT  600
NFIGSFGQYP IGEIGRFDAD QFTPRFSGNG VSLTLGLPHC ENLSLSGAHH HQNFLPNQNI  660
QLGRRVDIGE ANDQFGTINT SAPHSSAAFE NIDIQNRKRF VAQLLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16390448563Homeobox protein Meis2
3k2a_B6e-16390448563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008241058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241058.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_008241059.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_008241060.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_008241062.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_016651804.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLM5WF990.0M5WF99_PRUPE; Uncharacterized protein
STRINGXP_008241058.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-158BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]