PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008240829.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 351aa MW: 38845.8 Da PI: 6.3593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008240829.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	196	243	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_008240829.1 196 NHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 243 79************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.22E-9	190	247	No hit	No description
SuperFamily	SSF47459	2.62E-15	190	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	192	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.469	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-6	196	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDPTGATVPG SILPGPEFES LQFREEIHRL MAVPPENASS FTALLELPPT QAMELLHLSP 60 EANSTPTPAA MSGEARVQHP FNSSLTFPTN PALIERAAKF SIFAGEGSPE TSSMPSNSGA 120 DLEKVKTEPV ETDSNPNSSQ LTLDATKNNQ RSSAKRKERE KKVKLSTKKS KSEIKEDADK 180 VPYVHVRARR GQATDNHSLA ERARREKINA RMKLLQELVP GCNKISGTAL VLDEIINHVQ 240 SLQRQVEFLS MRLAAVNPRI DFNLDSILAA ESGSLMEANF ANMVTPLMWP EVPINGNRQP 300 YHQQWHFDTN QPGWGREEET HTFITPETSL ISCDSSANSA TLQRSHLKME M

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDPTGATVPG SILPGPEFES LQFREEIHRL MAVPPENASS FTALLELPPT QAMELLHLSP  60
EANSTPTPAA MSGEARVQHP FNSSLTFPTN PALIERAAKF SIFAGEGSPE TSSMPSNSGA  120
DLEKVKTEPV ETDSNPNSSQ LTLDATKNNQ RSSAKRKERE KKVKLSTKKS KSEIKEDADK  180
VPYVHVRARR GQATDNHSLA ERARREKINA RMKLLQELVP GCNKISGTAL VLDEIINHVQ  240
SLQRQVEFLS MRLAAVNPRI DFNLDSILAA ESGSLMEANF ANMVTPLMWP EVPINGNRQP  300
YHQQWHFDTN QPGWGREEET HTFITPETSL ISCDSSANSA TLQRSHLKME M

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008240829.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008240829.1	0.0	PREDICTED: transcription factor bHLH48-like
Swissprot	Q8VZ02	1e-103	BH048_ARATH; Transcription factor bHLH48
TrEMBL	M5VYC8	0.0	M5VYC8_PRUPE; Uncharacterized protein
STRING	XP_008240829.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-104	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]