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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 456aa MW: 52362.6 Da PI: 8.3159 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 8.3e-12 | 22 | 106 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++k+ r+ +p kf++++g++ s + l+ +sg ++e++l+ r ++g++++ kGW eF k L+ g ++vF ++g+s+f v +f+k XP_008240722.1 22 TSKKTRIKIPMKFLTRYGEN--LSSPVHLKLPSGLEMEIELR-RSNDGWVWFDKGWPEFSKLCSLDYGNSLVFGYEGNSNF--SVFIFDK 106 567789***********977..6667***************3.666677****************************9999..7777776 PP | |||||||
2 | B3 | 53.3 | 5e-17 | 199 | 278 | 7 | 89 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++ + +g l lp +fa++h ++k++ + ++l+ ++gr+W v+++y+ + + +++GW F+++n+Lk+gD++vF l++ +e XP_008240722.1 199 QPVYIHRGYLHLPSEFARRH-LVKQRARNIILKILDGRTWVVEFKYETSI--TRFQRGWLAFARDNNLKVGDVCVFVLIDCNE 278 555667889***********.45567789***************555554..669**********************986333 PP | |||||||
3 | B3 | 49.6 | 7.2e-16 | 376 | 455 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l +p +fa+++ +k +++t+ l+ + rsW v+li k ++ l +GW+eFv +n L egD+++F+l++r++ l+v++fr XP_008240722.1 376 LHVPVTFARSFVKK--RKQTVNLQV-RERSWPVNLIGHTKESGAKLCGGWREFVTENCLMEGDVCIFELIERNDIVLKVHIFR 455 789*****999755..445788665.88*******9877777788999**********************999999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-17 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-17 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.41E-8 | 12 | 105 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 13 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-5 | 14 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-9 | 22 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-21 | 186 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-22 | 187 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.16E-20 | 192 | 287 | No hit | No description |
PROSITE profile | PS50863 | 14.48 | 193 | 289 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-13 | 194 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-15 | 198 | 279 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-20 | 358 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-18 | 358 | 455 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 361 | 456 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.34E-16 | 363 | 455 | No hit | No description |
SMART | SM01019 | 2.0E-10 | 365 | 455 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-14 | 376 | 455 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MASLHDSPAS IPHFLRIILD KTSKKTRIKI PMKFLTRYGE NLSSPVHLKL PSGLEMEIEL 60 RRSNDGWVWF DKGWPEFSKL CSLDYGNSLV FGYEGNSNFS VFIFDKTATE IEYPKPEMEE 120 TDSDSEEDDD DDDDDESGHA RGEIKRENDM PTKKDFGGSS SSRIFLGRMH PLTKSEKALA 180 LQRANAFESE YPSFLVAIQP VYIHRGYLHL PSEFARRHLV KQRARNIILK ILDGRTWVVE 240 FKYETSITRF QRGWLAFARD NNLKVGDVCV FVLIDCNERL FEVFFYRTNN AEDCPLSPGH 300 GGVAIDRVEK RRNPMIKVET DCTTNYENGK YKRLKTGGQV TQRPLNSSSR SLEAANRFTP 360 KNPSFRATLG STPLILHVPV TFARSFVKKR KQTVNLQVRE RSWPVNLIGH TKESGAKLCG 420 GWREFVTENC LMEGDVCIFE LIERNDIVLK VHIFRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-18 | 167 | 455 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-18 | 167 | 455 | 22 | 143 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240722.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF324923 | 7e-45 | AF324923.1 Prunus armeniaca microsatellite ssrPaCITA13 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240722.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A251N6Q1 | 0.0 | A0A251N6Q1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240722.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-20 | B3 family protein |