PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008240689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 25317.6 Da PI: 6.781 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.8e-14 | 2 | 34 | 12 | 44 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44 tf kR++ i KKA ELS LC+++v++i++ ++ XP_008240689.1 2 TFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 34 9***************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.04 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.81E-12 | 2 | 30 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-12 | 2 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-13 | 2 | 35 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTFRKRKKSI YKKADELSKL CGIDVCLIVY EADQKKGRAV QPETWPRDPT QFKRILNKYK 60 DSKDTSTPGL KRNFDMSDFY EDKKDHVDED DEKFQNLGKK IFEEEYPTKF QNLGKKISDE 120 EYPTWDNRID DFSQDELTKL IASLESKIQV ATKKIDSMER YMGFNKKQNQ CFVREDTNHD 180 EQPTYQVPGL MSPPSLVHCP MLPSAWVSRS EFEKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 7 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008240689.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008240689.1 | 1e-160 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A251N636 | 1e-138 | A0A251N636_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240689.1 | 1e-159 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14708 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 3e-19 | M-type_MADS family protein |